Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0569
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    73   2e-13
U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    30   1.8  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical protein
            B0464.6 protein.
          Length = 643

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 29/184 (15%)
 Frame = +2

Query: 53   LAPFLAIHTDQQYLIKRIKELSRGGCMSAYKWDGGSSD---------------WDESRPP 187
            L PFL++H +Q+YLI RIKEL     M AYKW+ G S+               W++S P 
Sbjct: 459  LLPFLSVHPNQKYLISRIKELCATQFMDAYKWNSGGSEPTDDNDQMTRLVRREWNDSLPT 518

Query: 188  DAELVLRLVATYLDTQLPSN---GGTK---PFTDGHL---SVAPNPPPRGPRVLGIHRVT 340
            DA LV  +   Y+D QL SN   G ++   PFT       +  P+   R P    +H VT
Sbjct: 519  DAVLVFDIFLAYMDAQLNSNCLVGDSRLDQPFTSRFCVKNAQKPSSAQRTPFSFYLHMVT 578

Query: 341  MRPPH--YXXXXXXXXXXXC---RGRNNMLHTLLMFVXXXXXXXXXXXXXVHLGRAGLNM 505
              PPH  +           C   R   N+   +  F+               +G +G+NM
Sbjct: 579  KSPPHAEFVHIDENGYAIKCNVLRQSPNLFRAIAQFIHFVKHENHGYLDQTSIGPSGINM 638

Query: 506  LWII 517
             +++
Sbjct: 639  TYVL 642


>U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical
           protein C25G6.1 protein.
          Length = 185

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 126 PPRDSSLIRLMRYCWSVCIARNGASPACIRPVQLICRPSCR 4
           P +D S   + R+ +  C+ +    PAC RPV   CRPSCR
Sbjct: 115 PYQDGSA-PVKRWVFDFCVVQ----PACCRPVLGRCRPSCR 150


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 248  RSKEAECLDMWPLAEALAPHREAWIRPSQNYLRPTCK 138
            R +E    D +P+ EALAP   +W+   +N+LR   K
Sbjct: 1573 RPQELTAGDEFPIYEALAPVMVSWLSVVENFLRTVDK 1609


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 123  PRDSSLIRLMRYCWSVCIARNGASPACIRPV 31
            PR  S  R +R   S  + R+GA+P CI+PV
Sbjct: 1764 PRQVS--RALRMKSSAAVPRHGANPLCIQPV 1792


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,379
Number of Sequences: 27780
Number of extensions: 317913
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)