Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0569
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07970.1 68414.m00868 expressed protein                             41   0.001
At1g61080.1 68414.m06877 proline-rich family protein                   30   0.32 
At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative / ...    29   3.0  
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea...    29   3.9  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    28   5.2  
At3g42990.1 68416.m04515 hypothetical protein                          28   5.2  
At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil...    28   6.8  
At5g12235.1 68418.m01436 CLE22, putative CLAVATA3/ESR-Related 22...    27   9.0  
At4g12460.1 68417.m01971 oxysterol-binding family protein simila...    27   9.0  

>At1g07970.1 68414.m00868 expressed protein
          Length = 693

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +2

Query: 8   HEGLQMSWTGLMQAGLAPFLAIHTDQQYLIKRIKELSRGGCMSAYKWDGG------SSDW 169
           H  LQ    G    GL P  +I  D  Y ++RI+ L+ G C+  Y+++GG      +  W
Sbjct: 491 HRRLQGLMKGEWVKGLLPRSSIPAD--YTVQRIRALAEGTCVKNYEYNGGADTREKNKKW 548

Query: 170 DESRPPDAELVLRLVATYLD 229
               P D+ L+L L   +L+
Sbjct: 549 SLEPPTDSHLLLYLFCAFLE 568


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 29.9 bits (64), Expect(2) = 0.32
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +2

Query: 95  IKRIKELSRGGCMSAYKWDGGSSDWDESRPPDAELVLRLVATYLDTQLPSNGGTKPFTDG 274
           I  ++  S      + K++  S  +    PP     L  + T     LPS   T P  D 
Sbjct: 391 ISSLESTSESKLNHSEKYENSSQLFPPPPPPPPPPPLSFIKT-ASLPLPSPPPTPPIADI 449

Query: 275 HLSVAPNPPPRGP 313
            +S+ P PPP  P
Sbjct: 450 AISMPPPPPPPPP 462



 Score = 21.0 bits (42), Expect(2) = 0.32
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 290 PNPPPRGPRVLGIHRVTMRPP 352
           P PPP  P V+ +      PP
Sbjct: 475 PPPPPLPPAVMPLKHFAPPPP 495


>At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative /
           shikimate dehydrogenase, putative similar to
           dehydroquinate dehydratase/shikimate dehydrogenase
           [Nicotiana tabacum][GI:535771], dehydroquinate
           dehydratase/shikimate:NADP oxidoreductase [Lycopersicon
           esculentum][GI:3169883]
          Length = 603

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 143 KWDGGSSDWDESRPPDA-ELVLRLVATYLDTQL 238
           KW+GG  + DE+   D   L + L A Y+D +L
Sbjct: 157 KWEGGQYEGDENERRDVLRLAMELGADYIDVEL 189


>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
           family protein contains Pfam profile:PF00560 Leucine
           Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
           protein kinase domain; Pfam profile:PF00400 WD domain,
           G-beta repeat (7 copies)
          Length = 407

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 122 GGCMSAYKWDGGSSDWDESRPPDAELVLRLVATYLDTQLPSNGG 253
           GG   A+ W  G+ DW    P   + V  L  +Y D QL ++GG
Sbjct: 90  GGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSY-DGQLLASGG 132


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 95  IKRIKELSRGGCMSAYKWDGGSSDWDESRPPDAELVLR 208
           +K+IKEL  GG  S  K DGGS      +  + E+V++
Sbjct: 842 LKQIKELKTGGGRSMRKQDGGSGRM-RKQSHETEMVMK 878


>At3g42990.1 68416.m04515 hypothetical protein 
          Length = 129

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  QMSWTGLMQAGLAPFLAIHTDQQYLIKRIKELSR 121
           Q   +G+  +G+ P   +  D +YL  RIKE SR
Sbjct: 21  QKHLSGIFGSGVVPRRVLRADDKYLGNRIKESSR 54


>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
           to high affinity calcium antiporter CAX1 [Arabidopsis
           thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
           (CaCA) Family member PMID:11500563; non-consensus
           AT-acceptor splice site at intron 1
          Length = 459

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 630 LRTFAARGAVPTSYIFELTLTLSRT 556
           L  +AA G V TS I +++LTLSRT
Sbjct: 215 LLKYAATGEVSTSMINKMSLTLSRT 239


>At5g12235.1 68418.m01436 CLE22, putative CLAVATA3/ESR-Related 22
           (CLE22)
          Length = 103

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 81  TNSISSSGSK--NCPGAGA*VLTSGTEVVLTGTNP 179
           +N+ SS GSK  N  G G  V   G   V TG NP
Sbjct: 65  SNAASSRGSKYTNYEGGGEDVFEDGKRRVFTGPNP 99


>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
           to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 694

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 268 GRTSLCGTQPSTEGAQSFGDSSSDNEAS 351
           G+ S C T  S++  Q F D S ++EAS
Sbjct: 260 GKYSECSTSASSDDKQEFEDISEEDEAS 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,564
Number of Sequences: 28952
Number of extensions: 308222
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)