Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0568
         (555 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209296-1|BAD92533.1|  383|Homo sapiens syntaxin 16 isoform a v...    31   2.7  
BC068507-1|AAH68507.1|  778|Homo sapiens chromosome 11 open read...    31   3.6  
AK027207-1|BAB15691.1|  724|Homo sapiens protein ( Homo sapiens ...    31   3.6  
AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase D...    29   8.3  
AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase D...    29   8.3  
AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase D...    29   8.3  
AL031667-8|CAI42983.1|  524|Homo sapiens chromodomain helicase D...    29   8.3  
AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase D...    29   8.3  
AF525085-1|AAN59903.1|  488|Homo sapiens RIGB protein.                 29   8.3  

>AB209296-1|BAD92533.1|  383|Homo sapiens syntaxin 16 isoform a
           variant protein.
          Length = 383

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +2

Query: 143 PMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKS 322
           P+GR+   +S  ECR  V +V  NR+ + ERS  TL+ +   TG         K N+KKS
Sbjct: 323 PLGRSSSCLSPLECRVPVCNVFANRK-KSERSSYTLACSVPGTGG--------KKNNKKS 373

Query: 323 TR 328
            R
Sbjct: 374 KR 375


>BC068507-1|AAH68507.1|  778|Homo sapiens chromosome 11 open reading
           frame 63 protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query: 125 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 304
           TK++ +P G+   +++  +  +R   ++I ++C+ +  L + S+T+ +T S+   N  P+
Sbjct: 338 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 396

Query: 305 -MNSKKSTRDSSLVKTKLVI 361
              ++    D+S     +VI
Sbjct: 397 QQQNQNKPLDTSTKPESIVI 416


>AK027207-1|BAB15691.1|  724|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23554 fis, clone LNG09359. ).
          Length = 724

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query: 125 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 304
           TK++ +P G+   +++  +  +R   ++I ++C+ +  L + S+T+ +T S+   N  P+
Sbjct: 284 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 342

Query: 305 -MNSKKSTRDSSLVKTKLVI 361
              ++    D+S     +VI
Sbjct: 343 QQQNQNKPLDTSTKPESIVI 362


>AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase DNA
           binding protein 5 protein.
          Length = 2713

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 375
           AK  + + +     +KH+++  +D W++++   + K+   ++ E  L G N   +    W
Sbjct: 419 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 474

Query: 376 YNR 384
           YNR
Sbjct: 475 YNR 477


>AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase DNA
           binding protein 6 protein.
          Length = 2715

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 375
           AK  + + +     +KH+++  +D W++++   + K+   ++ E  L G N   +    W
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 476

Query: 376 YNR 384
           YNR
Sbjct: 477 YNR 479


>AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase DNA
           binding protein 6 protein.
          Length = 2715

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 375
           AK  + + +     +KH+++  +D W++++   + K+   ++ E  L G N   +    W
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 476

Query: 376 YNR 384
           YNR
Sbjct: 477 YNR 479


>AL031667-8|CAI42983.1|  524|Homo sapiens chromodomain helicase DNA
           binding protein 6 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 375
           AK  + + +     +KH+++  +D W++++   + K+   ++ E  L G N   +    W
Sbjct: 123 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 178

Query: 376 YNR 384
           YNR
Sbjct: 179 YNR 181


>AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase DNA
           binding protein 6 protein.
          Length = 2715

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 375
           AK  + + +     +KH+++  +D W++++   + K+   ++ E  L G N   +    W
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 476

Query: 376 YNR 384
           YNR
Sbjct: 477 YNR 479


>AF525085-1|AAN59903.1|  488|Homo sapiens RIGB protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +1

Query: 196 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 375
           AK  + + +     +KH+++  +D W++++   + K+   ++ E  L G N   +    W
Sbjct: 87  AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 142

Query: 376 YNR 384
           YNR
Sbjct: 143 YNR 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,453,711
Number of Sequences: 237096
Number of extensions: 1414893
Number of successful extensions: 2468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2468
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)