Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0568
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   1.6  
At3g24260.1 68416.m03047 hypothetical protein                          29   1.6  
At2g28550.2 68415.m03469 AP2 domain-containing transcription fac...    29   2.8  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    29   2.8  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   4.8  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   6.4  
At5g67180.1 68418.m08469 AP2 domain-containing transcription fac...    27   8.4  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   8.4  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 172 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 333
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +1

Query: 46  DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 213
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 214 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 336
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At2g28550.2 68415.m03469 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 381

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +1

Query: 190 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 351
           A A+  D+  +  R +   I     DY E MK   +  K+EF  I      GF  G +  
Sbjct: 187 AAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKY 246

Query: 352 ---TCYKCLRWYNRIIVFFCKKS 411
              T +KC RW  R+  F  KK+
Sbjct: 247 RGVTLHKCGRWEARMGQFLGKKA 269


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +1

Query: 190 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 351
           A A+  D+  +  R +   I     DY E MK   +  K+EF  I      GF  G +  
Sbjct: 187 AAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKY 246

Query: 352 ---TCYKCLRWYNRIIVFFCKKS 411
              T +KC RW  R+  F  KK+
Sbjct: 247 RGVTLHKCGRWEARMGQFLGKKA 269


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 82  ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 201
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 151 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 264
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At5g67180.1 68418.m08469 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2. [Mouse-ear cress] {Arabidopsis
           thaliana}
          Length = 352

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
 Frame = +1

Query: 190 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 351
           A A+  D+  +  R +   I     DY + +K   +  K+EF  +      GF  G +  
Sbjct: 130 AAARAYDRAAIKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKY 189

Query: 352 ---TCYKCLRWYNRIIVFFCKK 408
              T +KC RW +R+  F  KK
Sbjct: 190 RGVTLHKCGRWESRLGQFLNKK 211


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +1

Query: 22  LSIAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 201
           L+ + +   K   +D D    N K+   Y++ V +EG C    +E     K+ +Q    +
Sbjct: 66  LATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKE-LQCDLVE 124

Query: 202 CTDKQKVSARKIVKH 246
                K    KIVK+
Sbjct: 125 VQRDAKPPVCKIVKY 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,517,967
Number of Sequences: 28952
Number of extensions: 210567
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)