Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0566
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8D6Y4 Cluster: FOG: GGDEF domain; n=2; Vibrio vulnific...    35   1.8  
UniRef50_A0DAA4 Cluster: Chromosome undetermined scaffold_43, wh...    34   2.4  
UniRef50_Q7RS06 Cluster: Putative uncharacterized protein PY0056...    34   3.1  
UniRef50_UPI0001509E85 Cluster: hypothetical protein TTHERM_0045...    33   7.2  

>UniRef50_Q8D6Y4 Cluster: FOG: GGDEF domain; n=2; Vibrio
           vulnificus|Rep: FOG: GGDEF domain - Vibrio vulnificus
          Length = 654

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -1

Query: 509 YNVFISVGQSEPVDINALKQNAKRFVT 429
           YN+ ISVG SEP  +N LK ++  FVT
Sbjct: 605 YNITISVGASEPCGLNELKNSSDAFVT 631


>UniRef50_A0DAA4 Cluster: Chromosome undetermined scaffold_43, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_43, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 951

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -1

Query: 602  SIVKNQSKEVGKSYFHCKLVCNKYTVFAVAKYNVFISVGQSEPVDINALKQNAKRFVTKI 423
            +++K+  K + +SY  C+ + N++      +YN    + Q +P DI+ L QN K+     
Sbjct: 877  TLLKSDKKIIKESYNQCQQMINQFIQILEFQYN--FGLIQKQPPDISKLSQNFKKQSDFF 934

Query: 422  SKLV 411
            SK +
Sbjct: 935  SKFI 938


>UniRef50_Q7RS06 Cluster: Putative uncharacterized protein PY00561;
           n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00561 - Plasmodium yoelii yoelii
          Length = 585

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +3

Query: 483 LPYRNKYVIFCNRKYC---ILIANQFAMKIRFTYFFRLI---FYY*YTRTQ 617
           L Y N+YVI+ NR+Y    I I  + A +I +TY+  LI    YY Y + +
Sbjct: 487 LDYSNEYVIYINREYIIEDIEIIEEKAQEIEYTYYEYLIQSLLYYIYNKKE 537


>UniRef50_UPI0001509E85 Cluster: hypothetical protein
           TTHERM_00456720; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00456720 - Tetrahymena
           thermophila SB210
          Length = 1811

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 196 CLSIATVCKE*WI*LKQKLFCFSRLEKALSNFDVLV*DISLLAENRQCSSNFVIQYEFV 372
           C  I   C   +  ++Q +F  S LE+ L N   L+ D+    EN+  S NF+IQ  FV
Sbjct: 317 CNWINQSCSVFFCCIQQNIFWGSELEEILENVK-LISDVLYQKENKNVSLNFIIQRLFV 374


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,842,431
Number of Sequences: 1657284
Number of extensions: 10127975
Number of successful extensions: 20868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20867
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)