Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0566
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    33   0.001
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.3  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 400 LLTHILQPATQI-HTESQNYLNIVYFLLIRKYLKPKHQNLIKPFLVSKNKTIFVL 239
           +L  IL P  Q+ H E + Y NI+YF  I  YL      ++   + SK +T F++
Sbjct: 310 ILWIILVPEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFII 364


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 410 EFTPTDSHPTTCYTNSY*ITKLLEHCLFSAN 318
           +FTP D +P+ C    Y    L +H L  A+
Sbjct: 540 KFTPEDINPSLCTHIIYAFATLKDHKLAEAS 570


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 352 QNYLNIVYFLLIRKYLKPKHQNLIKPFLVSKNKTIF 245
           +NY NI+YF  I  ++      ++   + SK ++ F
Sbjct: 329 ENYYNILYFSRIMFHINSAVNPILYNIISSKFRSGF 364


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 284 DKAFSSLEKQNNFCFN*IHY 225
           D+AFSSL++ +N      HY
Sbjct: 554 DQAFSSLKELSNHMVKNSHY 573


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,859
Number of Sequences: 336
Number of extensions: 2928
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)