Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0566
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   1.6  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   6.6  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   8.8  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    25   8.8  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   8.8  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  YKKTVLFIS*LYRKAVLGFIECGICID 147
           Y +   F+S L   A++GFI CGI ID
Sbjct: 217 YGEVEFFVSSLKVMAMVGFIICGIVID 243


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 545 VCNKYTVFAVAKY--NVFISVGQSEPVDINALKQNAKRFVTKISKLV 411
           V NK  + +   Y  N  I +GQ+ P+DI   +  A+ F  K   ++
Sbjct: 28  VKNKEELLSTLTYFINYEIEMGQTYPIDIKMTRNEAEDFFFKFCTVI 74


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 274 FLVSKNKTIFVLIKSIIPYRQSRYLNTG 191
           F+++   T+F  +  ++PYRQ R   TG
Sbjct: 227 FIIAGLMTLFAALLFLLPYRQRRAALTG 254


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 388 CESVGVNSTSLLILVTNLFAFCFKAFMSTGSDCPTEIN 501
           C  +G++   LLI  +N F  CF +    GS   T ++
Sbjct: 566 CGILGLDQCILLIRESNCFVRCFPSRAELGSQNSTSLS 603


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 467 INALKQNAKRFVTKISKLVEFTPTDSHPTTCYTN 366
           +  L  NA RF+ K+ K     P +  P T  T+
Sbjct: 55  LRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTH 88


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 340 SSNFVIQYEFV*QVVGCESVGVNSTSLLILVTNLFAFCFKAFMSTGSDC 486
           SS +V  YE++  ++  E   + + S+L L TN+    + ++  T + C
Sbjct: 36  SSGYVNTYEYLNLILPPEENAITNLSMLELATNIAKGNYTSYNVTKAFC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,265
Number of Sequences: 5004
Number of extensions: 47366
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)