Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0566
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)                   28   7.0  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             27   9.2  

>SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 494 SVGQSEPVDINALKQNAKRF 435
           S+   EP+D+N LK+ A+RF
Sbjct: 94  SLSADEPIDVNKLKKRAERF 113


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 138 LYRLVFILISVIIFHLKAPVFKYRDCL*GIMDLIKTKIVLFFETRKGFIKF 290
           LYR+ ++L  VIIF + A ++ +   L  +   IK   V F      F+ F
Sbjct: 309 LYRIAYVLTQVIIFPVLAVIYFFMPFL-EVGRKIKRPFVKFINHTSSFVVF 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,961
Number of Sequences: 59808
Number of extensions: 326255
Number of successful extensions: 1241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)