Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0566
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    30   0.016
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.3  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 322 LIRKYLKPKHQNLIKPFLVSKNKTIFVLIKSII 224
           ++R +L PKH +  +P  +SKN+ +FV +   I
Sbjct: 534 VVRVFLGPKHDHQGRPISISKNQHLFVELDQFI 566


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 510 FCNRKYCILIANQFAMKIRFTYFFRL 587
           FC + YC+ +  + +  I FTY   L
Sbjct: 457 FCCKGYCMDLLKELSKTINFTYSLAL 482


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/67 (19%), Positives = 27/67 (40%)
 Frame = -1

Query: 611 TCVSIVKNQSKEVGKSYFHCKLVCNKYTVFAVAKYNVFISVGQSEPVDINALKQNAKRFV 432
           TC  I+KN + +   +Y+   L  +   +  +   N      Q  P  +       + +V
Sbjct: 61  TCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSLFWQQYPWVLGVSLCKIRAYV 120

Query: 431 TKISKLV 411
           +++S  V
Sbjct: 121 SEMSSYV 127


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 611 TCVSIVKNQSKEVGKSYFH 555
           TC+ IV N  + +G   FH
Sbjct: 201 TCIQIVFNLRRRLGYHLFH 219


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = -3

Query: 468 HKCFETERKEIRD*NKQAGRIHPY*LTSYNLLHKFILNHKIT*TLSIFC**GNILNQNIK 289
           H  +     +I + N    R++   L++YN L + ++N+  T T+ +      ++  N+K
Sbjct: 17  HIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLK 76


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 262 KNKTIFVLIKSIIPYRQSRYLNTGAF 185
           + KT+F  +  I+P     YL+  AF
Sbjct: 232 RRKTLFYTVNLIVPCVSISYLSVLAF 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,626
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)