Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0565
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.61 
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   1.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   2.5  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   2.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.3  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.7  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   5.7  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   7.5  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   7.5  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   9.9  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = -1

Query: 353 SNTDSSDVHSGEKRSPSKNVFTSSWPHKLLVADRSLAKCLTIALTAANFSAFIRLDNLSS 174
           S+T SS + S    S +    TSS     L +  +     + +L +++ ++       SS
Sbjct: 152 SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211

Query: 173 SIPSNSLRDKITNGLISFFCISGVTFETADHCDIFSDMNSKCSDISMN 30
           S+ S +  +  T+  ++   ++  T  TA    I S ++S     S N
Sbjct: 212 SLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSN 259


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 67  ENISQWSAVSKVTPEIQKKEIRPFVILSLKELEGIEDERLSSLMNAE 207
           E + +W  ++KV PEI      P  +      E +E E +SS  + E
Sbjct: 72  ERLKEWIVLAKVRPEIPLPPAAPIPMKKASNTEPVEKE-ISSFFSEE 117


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = +1

Query: 238 HFARLRSATKSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVS 417
           HF +   A+K  +   D +  +D  +     T  + VLL   K    I K  RM  G ++
Sbjct: 605 HFTKSVIASKEAFSYADAQARIDDQKMQDPLTQGMRVLLKLSK----ILKQKRMDEGALN 660

Query: 418 LQWKIDVSLSQSTIETENPSPQRRKEIMHT 507
           L    +V + Q+  ET +P     K+++ T
Sbjct: 661 LA-SPEVRI-QTDNETSDPMDVEIKQLLET 688


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 94  SKVTPEIQKKEIRPFVILSLKELEGIEDERL 186
           SKVT ++ K+E++ FV   + E  GI+++ L
Sbjct: 615 SKVTEDLLKEEMQAFVTKKIIEYIGIQEDSL 645


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 442 KKHQFSIVSSRHLVSSVNVLVYFHTISLCIATLTAQTYTQG 320
           + H FS  +SRH+   +N+  Y+   S C+  L    +  G
Sbjct: 94  RSHPFSTKTSRHVGGRLNLETYYSRPSECLMMLNQLPFCLG 134


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 394 VNVLVYFHTISLCIATLTAQTYTQGKNAAHLKMFLHHLGPISFWLPI 254
           +++ + +H IS     L  Q    GK+AAH  +  H +  + ++ PI
Sbjct: 144 ISIAIIWHVISTYGFALYRQRIVVGKHAAHFSLD-HWIFVVEYYAPI 189


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 367 LYENIPKHLRMKPGVVSLQWKIDVSLSQSTIETENPSPQRRKE 495
           LY  +  HL+  P   S  W +  SL +S  +    SP  R +
Sbjct: 102 LYNLLQNHLKTGPFYFSYTWDLTNSLQRSCTDEGKASPILRSD 144


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 RSATKSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVV 414
           R A K+L    ++ +++D  +   E    LS L   + +  +IP+H++ K  V+
Sbjct: 182 RMAVKTLDDFRELCSYIDQEKAREESYQVLSALCGNQGVAVDIPRHIKFKGSVI 235


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 522 SDICLNRRSNTDVSALH*SIPRTEICHSKRLK-EYDNFRTQEM 647
           SD+CL+RR N D++     I      ++K +K  Y+NF  +++
Sbjct: 153 SDVCLSRRLNRDINYRGRDIVGVLEQYNKFVKPSYENFVRRQL 195


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 591 EICHSKRLKEYDNFRTQEMHEKRMTH 668
           E C +  L +YD +RT+ +H+   +H
Sbjct: 731 EYCENMLLDDYDVYRTKLLHKAGYSH 756


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 55  EFISENISQWSAVSKVTPEIQKK--EIRPFVILSLK 156
           E I EN+     + K+TPEI KK  EI  F  L ++
Sbjct: 306 EQIVENVKAVEFIDKLTPEILKKIDEILNFTPLEIQ 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,140
Number of Sequences: 5004
Number of extensions: 55350
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)