Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0565
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 29 4.5
10_07_0128 + 13195958-13196011,13196399-13196407,13197257-131973... 29 4.5
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 29 4.5
03_02_0178 + 6195402-6199158,6199438-6200003 28 5.9
03_01_0610 + 4478521-4478715,4480003-4480090,4480255-4480321,448... 28 5.9
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 28 5.9
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 28 5.9
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 121 KEIRPFVILSLKELEGIEDERLSSLMNAEKFAAVRAIVRHFARLRSATKSLWGQDDVKTF 300
+++ P ++ L+ + D R+ LMN + F A VR R+R T + D+KT
Sbjct: 171 RKVNPSDVIILEGILVFHDSRVRDLMNMKIFVDTDADVRLTRRIRRDT--IEKGRDIKTV 228
Query: 301 LD 306
LD
Sbjct: 229 LD 230
>10_07_0128 +
13195958-13196011,13196399-13196407,13197257-13197337,
13197375-13197856,13198287-13198323,13198425-13198529
Length = 255
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -1
Query: 365 FSVHSNTDSSDVHSGEKRSPSKNVFTSSWPHK-LLVADRSLAKCLTIALTAANFSAFIRL 189
F++ S + +++H G PSK+V ++ P + L+V + S A L I++ A + +L
Sbjct: 169 FNMASKSKFAELHIGWDPLPSKHVVSTDLPQEALMVQEFSRAITLQISILKAQEAHLAKL 228
Query: 188 DNLSSSIPSNS 156
+ S + ++
Sbjct: 229 EKTFSRLQQST 239
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 121 KEIRPFVILSLKELEGIEDERLSSLMNAEKFAAVRAIVRHFARLRSATKSLWGQDDVKTF 300
+++ P ++ L+ + D R+ LMN + F A VR R+R T + D+KT
Sbjct: 146 RKVNPSDVIILEGILVFHDSRVRDLMNMKIFVDTDADVRLTRRIRRDT--IEKGRDIKTV 203
Query: 301 LD 306
LD
Sbjct: 204 LD 205
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 536 KTNVTMTCVKVCIISFLRCGEGFSVSIVD*LKETSIFHCKLTTPGFIRKCFGIFSYNFSV 357
K+N TC V I +L+C SI+ + + C+ T GF C I NF +
Sbjct: 1068 KSNSIGTCDLVDIFLYLKCRNLSCKSILP-VDDCDCKVCQRKT-GFCSSCMCIVCSNFDM 1125
Query: 356 HSNTDS 339
SNT S
Sbjct: 1126 ASNTCS 1131
>03_01_0610 +
4478521-4478715,4480003-4480090,4480255-4480321,
4480561-4480679,4480809-4480904,4481019-4481074,
4481400-4481485,4481914-4482048,4482216-4482300
Length = 308
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +1
Query: 94 SKVTPEIQKKEIRPFVILSLKELEGIEDERLSSLMNAEKF 213
+K+ ++K ++ + +K +EG + +RLS+++ EKF
Sbjct: 59 AKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLRDEKF 98
>02_04_0226 + 21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 76 SQWSAVSKVTPEIQKKE-IRPFVILSLKELEGIEDERLSSL 195
+QW + SK T E++ E +PFV +L+ G+ D+R S++
Sbjct: 899 AQWISTSKDTVEVEWNEHAQPFV-ATLRSGHGVPDQRQSTI 938
>01_05_0808 -
25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 537 NRRSNTDVSALH*SIPRTEICHSKRLKEYDNFRTQEMHEKRMTHV 671
+ + N ++ AL +P + S+ L+EY FR + + EK+ + V
Sbjct: 741 SNKENNNIEALE--VPCADEMQSQILQEYHEFRNENIDEKKASQV 783
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,894
Number of Sequences: 37544
Number of extensions: 316243
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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