Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0565
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14908| Best HMM Match : HCaRG (HMM E-Value=7.1e-28) 50 2e-06
SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 34 0.091
SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0) 33 0.28
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086) 31 0.84
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 30 1.5
SB_31942| Best HMM Match : TolA (HMM E-Value=0.36) 30 1.5
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 30 2.0
SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 2.6
SB_56845| Best HMM Match : zf-CCHC (HMM E-Value=0.00074) 29 2.6
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 2.6
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 29 2.6
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 29 2.6
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 29 2.6
SB_16103| Best HMM Match : RVP (HMM E-Value=0.027) 29 2.6
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32) 29 2.6
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08) 28 6.0
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 28 7.9
>SB_14908| Best HMM Match : HCaRG (HMM E-Value=7.1e-28)
Length = 171
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Frame = +1
Query: 250 LRSATKSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMK---PGVVSL 420
LR KSL + K L +R PE +LS ++ EK + + L + P + +L
Sbjct: 44 LRLPLKSLKAEQ-FKANLTEIRIPPEFIPDLSSVVFGEKRQQLEKRALENRCRLPKLDAL 102
Query: 421 QWKIDVSLSQSTIETE-NPSPQRRKEIMHTLTHVIVTFVLTDGQIRTYRLSISQFHELRY 597
+W++DV++S S + PS +++ L++G+ T+ + +++FH+LRY
Sbjct: 103 RWRVDVAISTSALNRSLEPS-------------IMMETKLSNGETHTFEVPVTKFHQLRY 149
Query: 598 VIASALKNMIILERRKCMK 654
+A LK M +E++ +K
Sbjct: 150 NVAYVLKEMEDVEKKNILK 168
>SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 35.1 bits (77), Expect = 0.052
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Frame = +1
Query: 34 IEMSEHLEFISENISQWSAVSKVTPEIQKKEIRPFVILSLKELEGIEDERLSSLMNAEKF 213
+ + ++ + E ++++ +S+ T E + +R KELE E+++ + + EKF
Sbjct: 22 VSLRAEIQRLEEQLAEYKHISEQTCE-ENVTLR-------KELEEREEDKKGASASEEKF 73
Query: 214 AAVRAIVRHFARLRSA-TKSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKH 390
+ ++ + +++LR + L G + LD L S + E + E+L E K
Sbjct: 74 SKLKTM---YSKLREEHIQLLRGLTSLNAELDNLTKSKK--QEEEARISAEELVEQTRKE 128
Query: 391 LRMKPGVVSLQWKIDVSLSQSTIETE 468
+ MK V +L +I+ SLS+S ETE
Sbjct: 129 MEMK--VAALNKEIE-SLSESKGETE 151
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 163 EGIEDERLSSLMNAEKFAAVRAIVRHFARLRSAT---KSLWGQDDVKTFLDGLRFSPECT 333
EG+ D+R++ A + + + + L A K++ V+ +DG S E
Sbjct: 12 EGLNDQRIALRDLANESISKKLLCERDLTLEKAVTIAKAMEQAGKVQVNIDGSPVSMELD 71
Query: 334 SELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
SV + +YE+ KHL +KP V L+
Sbjct: 72 KGSSVSIIPRNVYESTCKHLEVKPAKVKLR 101
>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
Length = 564
Score = 32.7 bits (71), Expect = 0.28
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Frame = +1
Query: 67 ENISQWSAVSKVTPEIQKKEIRPFVILSLKELEGIEDERLSSLMNAEKFAAV--RAIVRH 240
EN+ + A +K + K+ I PF I +L ELE E +K + + RA+
Sbjct: 19 ENLGK--AFTKAKAVVDKEGIPPFFIRALSELEDFVKENWEDAEGRKKLSKINARALATL 76
Query: 241 FARLRSATKSLWGQDDVKTFLDGL-RFSPECTSELSVLLCTEKLYENI 381
+LR +K +DD++ + + + + P LS C +N+
Sbjct: 77 RQKLRKYSKDF--EDDIEKYRESIGQPLPVVVQALSTTFCDVLEVDNV 122
>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
Length = 502
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 184 LSSLMNAEKFAAVRAIVRHFARLRSATKSLWGQDDVKTFLDGLR 315
L + M A + AA++ + H ++LRS LWG ++ +T+ LR
Sbjct: 25 LKAYMKAPQAAAIQLMSDHGSQLRSKLLVLWGDENQRTWRKTLR 68
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ +DG S E SV + +YE+ KHL +KP V L+
Sbjct: 133 VQVNIDGSPVSMELDKGSSVSIIPRNVYESTCKHLEVKPAKVKLR 177
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = +1
Query: 361 EKLYENIPKHLRMKPGVVSLQWKIDVSLSQSTIETENPSPQRRK-EIMH--TLTHVIVTF 531
EKL + + L+ PG++ S+ST+E ++PS Q+RK + H L++ ++ F
Sbjct: 458 EKL-DKMQSLLQTIPGLLERTKSTSSDTSESTMEAKSPSSQKRKFRLQHRKKLSNTMLQF 516
Query: 532 VLT-DGQIRT 558
+T G+I++
Sbjct: 517 TVTKSGRIKS 526
>SB_31942| Best HMM Match : TolA (HMM E-Value=0.36)
Length = 589
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 313 RFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQWKIDVSLSQSTIETENPSPQRRK 492
R + E TS V + T++ I H+R+ G+V + + S Q+ ++ N + K
Sbjct: 89 RVTSELTSLEGVTMTTQQERVQIQDHIRLTEGLVRSGYGVVTSTMQAAVDQANATDTYLK 148
Query: 493 EIMHTLT 513
E++ T
Sbjct: 149 ELVPRFT 155
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 292 KTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
K+ L G R + T SV + +YE+ KHL +KP V L+
Sbjct: 280 KSTLKGPRLAWNWTRGSSVSIIPRNVYESTCKHLELKPAKVKLR 323
>SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 230 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 274
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 261 VQVSVEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 305
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 744 VQVSVEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 788
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 291 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 335
>SB_56845| Best HMM Match : zf-CCHC (HMM E-Value=0.00074)
Length = 231
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 163 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 207
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 201 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 245
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 78 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 122
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 313 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 357
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 1031 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 1075
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 90 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLHLKPAKVKLR 134
>SB_16103| Best HMM Match : RVP (HMM E-Value=0.027)
Length = 274
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 49 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 93
>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
Length = 1086
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 289 VKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
V+ ++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 280 VQVNIEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 324
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 301 LDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQ 423
++G S E + SV + +YE+ KHL +KP V L+
Sbjct: 211 IEGSPVSMELDTGSSVSIIPRNVYESTCKHLELKPAKVKLR 251
>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 428 FHCKLTTPGFIRKCFGIFSYNFSVHSN 348
F+C+L GF R G+FS +H N
Sbjct: 468 FYCQLIPNGFTRDSAGLFSLRVFIHEN 494
>SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08)
Length = 281
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 265 KSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLY---ENIPKHLRMKPG 408
+ LW D ++F + L P C + +L +K+Y E I +++ MK G
Sbjct: 5 EGLWAGDIEQSFQEALAIYPPCGRQKIMLSTKDKMYGRNELIARYILMKTG 55
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 296 VFTSSWPHKLLVA-DRSLAKCLTIALTAANFSAFIRLDNLSSSIPSNSLRDKITNGLISF 120
VF S P +L + D + L AL+A S + + SSS S R T+ LI F
Sbjct: 3 VFRSEGPFQLFFSRDARPCQALIAALSAKYLSCSRSISHNSSSEICPSCRVLETSSLIEF 62
Query: 119 FCISGVT 99
F +S T
Sbjct: 63 FLLSAKT 69
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 350 NTDSSDVHSGEKRSPSKNVFTSSWPHKLLVADRSLAKCLTIALTAANFS 204
N D D++ EK+SP SSW + +L + K ++ + +A FS
Sbjct: 320 NIDEMDIYILEKQSPMFPFLKSSWNNCILKSTLQSGKEISSSSSAKRFS 368
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,761,796
Number of Sequences: 59808
Number of extensions: 402736
Number of successful extensions: 1160
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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