Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0565
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77738-1|CAB01297.1| 89|Caenorhabditis elegans PP1-like Ser/Th... 29 3.0
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 28 5.3
Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 28 6.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 6.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 6.9
AF045644-1|AAC02601.1| 543|Caenorhabditis elegans Hypothetical ... 28 6.9
Z99771-1|CAB16919.2| 910|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z79757-8|CAB02128.2| 355|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z66511-8|CAA91319.2| 910|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z77738-1|CAB01297.1| 89|Caenorhabditis elegans PP1-like Ser/Thr
protein phosphataseprotein.
Length = 89
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 496 SLSCVVAKDSPFQLLIDLKKHQFSIV 419
S+SC V++ S F L++LK QF+I+
Sbjct: 7 SVSCSVSRSSEFLDLVELKNFQFNII 32
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 280 QDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKHLRMKPGVVSLQWKIDVSLSQ 450
++D++ ++ R PECT S + T K ++ P + + G+++ D+S Q
Sbjct: 24 EEDIQKIVEFFRCDPECTFNHSEV--TSKTIKDFPSNCEIVCGILNFNSNTDLSEDQ 78
>Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 409 VVSLQWKIDVSLSQSTIETE--NPSP-QRRKEIMHTLTHVIVTFVLT 540
V+++ + I V I E SP QRR+ + HTL IVTF L+
Sbjct: 581 VITVTYHIKVRRQHDIIHNELRTQSPHQRRERLFHTLILSIVTFFLS 627
>Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 409 VVSLQWKIDVSLSQSTIETE--NPSP-QRRKEIMHTLTHVIVTFVLT 540
V+++ + I V I E SP QRR+ + HTL IVTF L+
Sbjct: 581 VITVTYHIKVRRQHDIIHNELRTQSPHQRRERLFHTLILSIVTFFLS 627
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 85 SAVSKVTPEIQKKEIRPFVIL-SLKELEGIEDERLSSLMNAEKFAAVRAIVRHFARLRSA 261
+ V VTP+ KEIR I + KE+ E+E + E +A + + +L
Sbjct: 570 NGVLAVTPD--GKEIRLADIWPTRKEVAKFEEEFVKPQFFREVYANIELGSTEWQQLECP 627
Query: 262 TKSLWGQDDVKTFLDGLRFSPECTSEL 342
L+ DD T++ + F TSEL
Sbjct: 628 AVKLYPWDDASTYIKKVPFFDGMTSEL 654
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 127 IRPFVILSLKELEGIEDERLSSLMNAEKFAAVRAIVRHFARLRSATKSLWGQDDVKTFLD 306
+R F+ ++ +G E+ ++ + EKF A +R L+ WG + T+ +
Sbjct: 411 VRHFLACVSQDAQG-EETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKWGNRLLPTYTE 469
Query: 307 GLRFS 321
G RF+
Sbjct: 470 GERFT 474
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 127 IRPFVILSLKELEGIEDERLSSLMNAEKFAAVRAIVRHFARLRSATKSLWGQDDVKTFLD 306
+R F+ ++ +G E+ ++ + EKF A +R L+ WG + T+ +
Sbjct: 411 VRHFLACVSQDAQG-EETMVNLTVGTEKFHASGLRIRDMGYLKVYVYEKWGNRLLPTYTE 469
Query: 307 GLRFS 321
G RF+
Sbjct: 470 GERFT 474
>AF045644-1|AAC02601.1| 543|Caenorhabditis elegans Hypothetical
protein F57H12.5 protein.
Length = 543
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 160 LEGIEDERLSSLMNAEKFAAVRAIVRHFARLRSATKSLWGQDDVKTFLDGL-RFSPECTS 336
++ I+ +R + + ++A++ AIV + + K D+ F+D L SP C+
Sbjct: 474 MKNIKQQRPGGVESFAQYASIYAIVFDYIARKRGGKKAPVNKDINRFIDELAEISPACSP 533
Query: 337 ELSVLLCTE 363
+ L TE
Sbjct: 534 TKVMPLSTE 542
>Z99771-1|CAB16919.2| 910|Caenorhabditis elegans Hypothetical
protein D1043.1 protein.
Length = 910
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 229 IVRHFARLRSATKSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKH--LRMK 402
IVR RL + ++W + V F++ LR S S + T L +N PK L +K
Sbjct: 258 IVRQLRRLANFP-NIWNEQQVLIFVESLRPSMIDESLMDFFDATTSLVKNCPKENLLALK 316
Query: 403 PGVVS 417
V+S
Sbjct: 317 GLVIS 321
>Z79757-8|CAB02128.2| 355|Caenorhabditis elegans Hypothetical
protein F55B12.7 protein.
Length = 355
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 496 SLSCVVAKDSPFQLLIDLKKHQFSIVSS 413
S+SC+V D+ +L ++ Q SIVSS
Sbjct: 4 SISCIVVPDAYIKLFRTIRMRQISIVSS 31
>Z66511-8|CAA91319.2| 910|Caenorhabditis elegans Hypothetical
protein D1043.1 protein.
Length = 910
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 229 IVRHFARLRSATKSLWGQDDVKTFLDGLRFSPECTSELSVLLCTEKLYENIPKH--LRMK 402
IVR RL + ++W + V F++ LR S S + T L +N PK L +K
Sbjct: 258 IVRQLRRLANFP-NIWNEQQVLIFVESLRPSMIDESLMDFFDATTSLVKNCPKENLLALK 316
Query: 403 PGVVS 417
V+S
Sbjct: 317 GLVIS 321
>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -1
Query: 329 HSGEKRSPSKNVFTSSWPHKLLVADRSLAKCLTIALTAANFSAFIRLDNLSSSIPSNSLR 150
+SG S S + FT +DRS + ++A+T + +R L IP N +
Sbjct: 82 YSGHPLSTSTSQFTRIHKADKKASDRSRSAFTSLAITKRLTALGLRERELKYGIPPNQIS 141
Query: 149 DKITN 135
I+N
Sbjct: 142 STISN 146
>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -1
Query: 329 HSGEKRSPSKNVFTSSWPHKLLVADRSLAKCLTIALTAANFSAFIRLDNLSSSIPSNSLR 150
+SG S S + FT +DRS + ++A+T + +R L IP N +
Sbjct: 82 YSGHPLSTSTSQFTRIHKADKKASDRSRSAFTSLAITKRLTALGLRERELKYGIPPNQIS 141
Query: 149 DKITN 135
I+N
Sbjct: 142 STISN 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,232
Number of Sequences: 27780
Number of extensions: 315304
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -