Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0565
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.38 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -1

Query: 200 FIRLDNLSSSIPSNSLRDKITNGLISFFCISGVTFETADH 81
           F R D LS       LR KI      ++CISG   E  DH
Sbjct: 302 FARFDQLSERF--EQLRIKILGDC--YYCISGAPIERPDH 337


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 182 LSSSIPSNSLRDKITNGLISFFCISGVTFETADHCDIFSD 63
           LS  I +N   DK  NGL    C S +  +  +  D F D
Sbjct: 115 LSECINANKSTDKCENGLNFIICFSKLLSDMYE--DTFED 152


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -1

Query: 236 LTIALTAANFSAFIRLDNLSSSIPSNSLRDKITNGLISFFCISGVTFETAD-HCDIFSDM 60
           LT+ +     S     +N S   P ++ R  +    I    +S  + ET +  C+     
Sbjct: 303 LTLRIHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKI-SVSYPSTETLNTKCNTLERT 361

Query: 59  NSKCSDISMNYS 24
            SKCS  S++YS
Sbjct: 362 PSKCSQTSVHYS 373


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 519 HSDICLNRRSNTDVSALH*SIP 584
           H  + +NR+ N+DV   H S P
Sbjct: 258 HQPVTVNRQLNSDVQPGHGSPP 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,581
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)