Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0565
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...    31   0.53 
At5g52500.1 68418.m06513 expressed protein strong similarity to ...    31   0.92 
At3g53930.1 68416.m05958 protein kinase family protein contains ...    29   3.7  
At2g30590.1 68415.m03727 WRKY family transcription factor              28   4.9  
At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)...    28   6.5  
At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP...    28   6.5  
At5g01810.1 68418.m00100 CBL-interacting protein kinase 15 (CIPK...    27   8.6  
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    27   8.6  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = -1

Query: 314 RSPSKNVFTSS-WPHKLLVADRSLAKCLTIALTAANFSAFIRLDNLSSSIPSNSLRDKIT 138
           R+ +KN F +S  P  + ++  SL++C++  + A + S  I+   +S+ + +NSL +  +
Sbjct: 8   RALTKNKFVASNAPRSISISITSLSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSS 67

Query: 137 NGLI 126
             L+
Sbjct: 68  ISLL 71


>At5g52500.1 68418.m06513 expressed protein strong similarity to
           unknown protein (emb|CAB68146.1)
          Length = 363

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -1

Query: 383 GIFSYNFSVHSNTDSSDVHSGEKRSPSKNVFTSSWPHKLLV--ADRSLAKCLTIALTAAN 210
           G+F   F  H+N DSS  +     SP+K  F S    +LL+  A+ +++ C+ +      
Sbjct: 2   GLFLVLFPDHNNNDSSSYY-----SPAKTTFRSKLSSRLLLSKAESTISSCIILLFLTLF 56

Query: 209 FSAFIRLDNLSSSIPSNS 156
                  +  SS  P+ S
Sbjct: 57  LFTLSTFEEPSSRFPAIS 74


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 397 SVNVLVYFHTISLCIATLTAQTYTQGKNAAHLKMFLHHLGPISFW 263
           S N L    ++  C A +    + +G+N  HL+ F   L  ++ W
Sbjct: 507 STNSLTRIRSLQKCAAAIAELVHERGENGKHLEAFSIQLVILAIW 551


>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 446 LKETSIFHCKLTTPGFIRKCFGIFSYNFSVHSNTDSSDVHSGEK 315
           +  T  F   L+  G +    G  S++F V S+TD + +HS  K
Sbjct: 223 MSSTRSFVSSLSIDGSVANIEGKNSFHFGVPSSTDQNSLHSKRK 266


>At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)
           identical to pentacyclic triterpene synthase
           [gi:6650208] [PMID:11247608]
          Length = 766

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 46  EHLEFISENISQWSAVSKVTPEIQKKEIRPFVILSLKELEGIE 174
           E++E     I   +  SK  PE +KKE+  F+   +K +E ++
Sbjct: 566 EYVECTGSAIVALTQFSKQFPEFRKKEVERFITNGVKYIEDLQ 608


>At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 442

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/92 (25%), Positives = 43/92 (46%)
 Frame = +1

Query: 337 ELSVLLCTEKLYENIPKHLRMKPGVVSLQWKIDVSLSQSTIETENPSPQRRKEIMHTLTH 516
           + S L+    +Y+ + +H R+   + S      +S+   T     P+ +  KE+    + 
Sbjct: 315 KFSQLVYLHLIYD-MTQHFRLMQFLKSAPILEMLSIRDLTSPRSTPTAKSLKELRSVESP 373

Query: 517 VIVTFVLTDGQIRTYRLSISQFHELRYVIASA 612
             VT +L   QIR ++ +  Q   LRYV+ +A
Sbjct: 374 DCVTTMLKVLQIRNFKPNRLQISVLRYVLDNA 405


>At5g01810.1 68418.m00100 CBL-interacting protein kinase 15 (CIPK15)
           identical to CBL-interacting protein kinase 15
           [Arabidopsis thaliana] gi|13249134|gb|AAK16692;
           identical to novel serine/threonine protein kinase
           [Arabidopsis thaliana] gi|1777312|dbj|BAA06311; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain
          Length = 421

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 331 TSELSVLLCTEKLYENIPKHLRMKPGVVSLQWKIDVSLSQSTIETE 468
           TS       TEKL E I K L+MK      +W++ +S   + +E E
Sbjct: 334 TSNREASEITEKLVE-IGKDLKMKVRKKEHEWRVKMSAEATVVEAE 378


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 439 SLSQSTIETENPSPQRRKEIMHTLTHVIVTFVLTDGQIRTY 561
           ++S S  + +   PQR   IMHT+T  +  F + DG +R +
Sbjct: 216 AVSSSPQQQQQEQPQR---IMHTITFWLNGFTVNDGPLRGF 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692,146
Number of Sequences: 28952
Number of extensions: 277729
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)