Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0564
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    70   1e-12
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    46   2e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    44   1e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    36   0.030
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    36   0.030
At3g18900.1 68416.m02400 expressed protein contains Pfam profile...    30   1.1  
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   2.6  
At3g13620.1 68416.m01714 amino acid permease family protein weak...    29   3.4  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = +1

Query: 19  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 198
           M L+E+F++ A  V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DA
Sbjct: 1   MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59

Query: 199 WHKLAGTSKEDAQKAYIEIVEGLI 270
           W  + G S E+A   YI  V+ L+
Sbjct: 60  WKAVEGKSSEEAMNDYITKVKQLL 83


>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/77 (37%), Positives = 40/77 (51%)
 Frame = +1

Query: 37  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 216
           F   AA  +  + +P+D Q   LY  +K AT G    A +P  L +  +AK+ AW KL  
Sbjct: 114 FVTTAAADRLSQKVPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 171

Query: 217 TSKEDAQKAYIEIVEGL 267
              E+A + YIEIV  L
Sbjct: 172 MPPEEAMEKYIEIVTQL 188


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = +1

Query: 37  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 216
           F  AAA+ +  + +  + QL  LY  +K AT G    A +P  L +  +AK+ AW KL  
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 161

Query: 217 TSKEDAQKAYIEIVEGL 267
              E+A + YI++V  L
Sbjct: 162 MPPEEAMEKYIDLVTQL 178


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +1

Query: 40  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 219
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 220 SKEDAQKAYIEIVE 261
              +A + +++I+E
Sbjct: 85  PSIEAMRLFVKILE 98


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +1

Query: 40  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 219
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 220 SKEDAQKAYIEIVE 261
              +A + +++I+E
Sbjct: 85  PSIEAMRLFVKILE 98


>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547; contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 815

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 603 TERPSTCILLKHDFEKDASYFIAVQYHALAPWKYRS 496
           TE P T  LLK DF  + S  + + YH+L   ++ +
Sbjct: 649 TETPRTISLLKFDFSIEKSVLVPLPYHSLQSRRFEA 684


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 624 LNQNKYKTERPSTCILLKHDFEKDASYFIAV 532
           +N N YKTE  S C+ L   F     +FI +
Sbjct: 409 INDNHYKTEIASRCVELAEQFAPSNQWFIQI 439


>At3g13620.1 68416.m01714 amino acid permease family protein weak
           similarity to SP|Q9WTR6 Cystine/glutamate transporter
           (Amino acid transport system xc-) {Mus musculus};
           contains Pfam profile PF00324: Amino acid permease
          Length = 478

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 110 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 12
           AY+L   A +G   +FF + + W N  W  ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,952,349
Number of Sequences: 28952
Number of extensions: 248768
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)