Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0563
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   4.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   7.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   10.0 
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   10.0 

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 261 VDYIGITFTLHTEEKLICHLLVIMWLTNK 175
           +DY+     L   E  ICHLL  M LT K
Sbjct: 299 IDYLNEACGLSLPEDEICHLLTRMMLTAK 327


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 241 LYITYRRKAHL--PLTSNHVAYK*EKKNLGDN*LSLHLSLIRMSDSKIT 101
           +Y+TYRRK H   PL         E+ N+ +N +S + S +++  S  T
Sbjct: 174 IYLTYRRKRHTHDPLDFEERQLT-EESNVNENAISQNPSTVQLGVSAST 221


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 648 YNFYKSKIRSNYFRREFNRYVFWFEILKREIPSLAPTPAIDLNLKDYSFPVYKNYI*F 475
           Y +  S I S  F  +   Y ++   L    PS++ T AIDL++  Y++  Y N + F
Sbjct: 47  YTYSPSGITS--FPLDLQSYTYYTTTLSIGRPSISYTVAIDLDM-PYTWLTYYNVMAF 101


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 485 TYNLKFKANAHVTNVDRLQAHXXXXXXXXXXLNYRQIFRVLTLLRVQTY 339
           T N+ F A  ++ NV    AH           NY+Q  R+ +L  VQT+
Sbjct: 204 TSNVYFAAKYNL-NVSGTVAHEWYMGIAAITQNYKQANRIASLKWVQTF 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,170
Number of Sequences: 5004
Number of extensions: 49049
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)