Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0563
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43030.1 68418.m05250 DC1 domain-containing protein contains ...    28   6.6  

>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 564

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 358 CYV-SKLIFVLILFSQMKFVFF--LMKISDTRKFKS*LYWNNLYITYRRKAHL 209
           CY  S  I  LI++   K V+F  LM I  + K  S LYW+N+Y       HL
Sbjct: 505 CYTCSSRINDLIVYKS-KDVYFCSLMCIKKSPKLDSGLYWSNMYDFTEPDLHL 556


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,048
Number of Sequences: 28952
Number of extensions: 232776
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)