Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0561
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    34   0.001
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.31 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.8  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   6.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
 Frame = +2

Query: 191 YGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECKTQS 370
           Y C C  GY   + G  +  D C T PC   E    C +   + +    +G   +     
Sbjct: 83  YTCHCPYGYTGKDCGEYV--DWCSTNPC---ENQATCVQNKNQYQCLCGVGWTGKVCDVE 137

Query: 371 TELCEPGCVCEGGFLRS--KNGTCVSIDECHRELCPVNEVYSSCRQP--NCNSDKCEYKY 538
              C+   + +   L+    NGTC  I   HR  C      S C+     C+S  C+   
Sbjct: 138 MVSCKDAALRKVVPLKKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQ--- 194

Query: 539 RSQSCPSDEPCEVGCVCKRGFRRADNGTCVDE 634
              +C  D      C C +GF+  +    VD+
Sbjct: 195 NGGTC-LDLIGSYSCKCPKGFQGQNCELNVDD 225



 Score = 26.2 bits (55), Expect = 0.23
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
 Frame = +2

Query: 173 DEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLS 352
           D EK    C      ++  NG C   ++C T  C  +    +C+ G+    NCT   +  
Sbjct: 480 DLEKQRQQCNQNKCPVKRGNGRC--DEECNTYACEFDG--NDCSLGINPWANCTASTRCW 535

Query: 353 ECKTQSTELCEPGCVCEGGFLRSKNGTCVSID-ECHRELCPVNEVYSSCRQPNCNSDKCE 529
           E       +C   C          N  C+    +C   L P N +Y +  Q +  +  C+
Sbjct: 536 EVFMDG--ICNEDC---------NNPECLFDGRDCEESLQPCNPIYDAYCQKHYANGLCD 584

Query: 530 Y 532
           Y
Sbjct: 585 Y 585



 Score = 25.8 bits (54), Expect = 0.31
 Identities = 35/132 (26%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
 Frame = +2

Query: 119 CRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTN 298
           C    C     +   QLV++    Y C CK+G++     + +  + C T PC      T 
Sbjct: 302 CLSNPCSNAGTLDCVQLVND----YHCNCKLGFMGRHCESKV--NFCATSPCQNGGVCTT 355

Query: 299 CAKGMCRQENCTE--LGKLSECKTQSTEL--CEPGCVCE----GGFL----RSKNGTCVS 442
              G   +  C E   GK  E      +   C+ G VC     GG++       NGT   
Sbjct: 356 IHAG--HKCTCPEGFYGKNCEFSGYDCDSNPCQNGGVCRISDGGGYICDCPSGTNGTNCE 413

Query: 443 ID---ECHRELC 469
           ID   EC    C
Sbjct: 414 IDTINECDSNPC 425


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 626 HRCHCQPYEILFYKHNRLR--RVRPRDTTVTCI 534
           HRC CQP     Y H  +   +V P +   TC+
Sbjct: 52  HRCQCQPGFTGKYCHENINDCKVNPCENGGTCV 84


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 440 SIDECHRELCP-VNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGC 583
           S +E  +  CP VNE  ++      + D C+Y Y       D P   GC
Sbjct: 163 SSEEVFQFECPKVNETVAATHPRYADPDDCQYFY--VCINGDTPRRSGC 209


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 249 CGIQVPFSSLRYPILQAHPYSHFSSSTN 166
           CG+ VP   ++  I+   P     S+TN
Sbjct: 403 CGVNVPVPPMQSQIINPQPQITSPSNTN 430


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 192 YSHFSSSTNWQKMISFFSMHF*GLHKP*RQVRSSFSG 82
           + +F++    Q ++ F   HF G  K   Q+ S+F+G
Sbjct: 71  FFNFATKKLEQFIVRFMKYHFFGTLKLWSQLFSTFAG 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,561
Number of Sequences: 336
Number of extensions: 4176
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)