Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0561
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    29   0.76 
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    28   1.3  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.3  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   3.1  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.1  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    26   4.0  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   5.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.3  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   5.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.3  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.3  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   7.1  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.1  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    25   9.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.3  

>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 570 QGSSEGHDCDLYLYSHLSELQLGCRQLEYTSFTGHSSLWHSSIDTHV 430
           +  SE H  D   Y  L+EL+ G  Q   TSF   S L    ++T +
Sbjct: 272 RSESEDHVTDSPAYVDLTELEGGFNQFNSTSFQSTSPLGLEIVETEI 318


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -3

Query: 304 SAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFAGTSIFALLLIN*LAEDDIIFFDALLR 125
           S + ++F++  RHSW+  + Y   I V+  S  +    F         +   + +D  ++
Sbjct: 424 SGLMDIFVYLWRHSWSNGIDYAKWISVALPSMLSNKVFFKAFKD---FDAWKVVYDDFIK 480

Query: 124 SA*TLKAGAFFVFWTSSCTEDDDVDER 44
               LK    F  +  S  E+D  DER
Sbjct: 481 CNDDLKGDKSFNDYILSTNEEDGEDER 507


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 175 IN*LAEDDIIFFDALLRSA*TLKAGAFFVFWTSSCTEDDDV 53
           IN       +  DA + +A T K G F  F++S C + DDV
Sbjct: 276 INPTGTSKALALDADIDAALTDKEGWFIQFYSSECDDCDDV 316


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 34  RSVSVRQHHRPLYSYLSRKRRTHLPSRFMQ 123
           R  +VR+ +  LY Y+    R H PS+  Q
Sbjct: 49  RYATVREDNGKLYLYMKTIERAHFPSKLWQ 78


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 440 SIDECHRELCPVNEVYSSCRQPNCNSDKCEYKYRS 544
           S+DE H+   PV +       PN ++D+  Y Y S
Sbjct: 401 SLDESHQHYVPVLDPAIYAANPNKSADRTYYPYYS 435


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 52  QHHRPLYSYLSRKRRTHLPSR 114
           Q H+PL   LS K  TH+P R
Sbjct: 35  QLHKPLTRNLSNKEDTHVPKR 55


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 243 IQVPFSSLRYP-ILQAHPYSHFSSSTNWQKMISFFSMHF*GLH 118
           +Q+  + L +P      PYS   S   W+ + S F+ +F  +H
Sbjct: 231 LQLAAALLAFPEFTNGSPYSLLLSDDRWEYLASLFTSNFTAVH 273


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +3

Query: 303  LRACVVRRTAQSWASCL-----NVKRNRQSCAS 386
            +RAC+V+   Q WA CL      + R+ Q C S
Sbjct: 2057 VRACIVQGFQQIWACCLWYWGSYIDRSMQECHS 2089


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 349 QLAQLCAVLLTTHALSAVREVFIHWTRHSWTLVLRYTSSI 230
           QL + C V   TH L A RE+ IH+ +    +VL   +S+
Sbjct: 359 QLTKACGV---THKLRAFRELLIHFPKWRGHVVLIQITSL 395


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 645 SQSLSSTQVPLS-ALRNPLLQTQPTSQGSSE 556
           +QSLSS ++PL  ++R+PL Q    ++  S+
Sbjct: 736 NQSLSSERIPLDPSMRSPLQQQSSENESKSQ 766


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 194 GCACKIGYLRDENGTCIP 247
           G   KIGY  DE+G C+P
Sbjct: 111 GVYLKIGYEMDESGFCLP 128


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 237 VPFSSLRYPILQAHPYSHFSSSTNW 163
           VPFS++  PI     Y+ F S+T+W
Sbjct: 56  VPFSAINLPIRFLIFYNAFRSNTSW 80


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 109 KAGAFFVFWTSSCTEDDDVDE 47
           +A A+ +F+T++  EDDDV E
Sbjct: 413 QATAYVLFYTAADEEDDDVSE 433


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -3

Query: 358 TFRQLAQLCAV--LLTTHALSAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFAGTSIFA 185
           T   L  +C +    +     A  E+F +W    +   L Y  S F++   YF  T I  
Sbjct: 106 TVGMLINVCVITSFASVDIYRAKDEIFANWVDMDYYEKLSYIGSAFITPALYFTLTLILF 165

Query: 184 L 182
           L
Sbjct: 166 L 166


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 280 HWTRHSWTLVLRYTSSIFVS 221
           HW+ H W   L+   SI VS
Sbjct: 886 HWSEHIWLTTLKKPQSIHVS 905


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 347 LSECKTQSTELCEPGCVCEGGFLRSKNGTCV-SIDECHRELCPVN 478
           L ECK+ S +      V E   +RSK   C    D  HR +C VN
Sbjct: 208 LGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHLHR-MCLVN 251


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 645 SQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHLSELQLGCRQLEYTSFTGH 466
           + S  S+ +   + +NP       SQ S+E        YS+++ LQ      + TS   +
Sbjct: 232 ANSDQSSFITYESTQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTY 291

Query: 465 SS 460
           S+
Sbjct: 292 ST 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,299
Number of Sequences: 5004
Number of extensions: 65624
Number of successful extensions: 204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)