Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0561
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0311 - 15635165-15635590,15635777-15638698 34 0.084
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 34 0.11
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 32 0.34
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 0.78
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 0.78
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 29 3.2
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 3.2
10_01_0054 - 773395-774518,776957-777124,777455-778376 29 4.2
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 29 4.2
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 4.2
06_03_0267 + 18970578-18972464 29 4.2
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 5.5
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 7.3
11_08_0003 + 27492503-27492812,27492863-27493148,27495399-274956... 28 7.3
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 28 7.3
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 28 7.3
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 27 9.7
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 27 9.7
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 398 CEGGFLRSKNGTCVSIDECHRELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEP 568
C+G +R++ G V ECH ++C + Y ++ C C+ Y+ D+P
Sbjct: 142 CDGSAMRNERGEDVDPCECHFKIC--RDCYLDAQKDGCICPGCKEHYKIGEYADDDP 196
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 33.9 bits (74), Expect = 0.11
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Frame = +2
Query: 254 KCPTVPCP--VNEYFTNCAK---GMCRQEN--C---TELGK-LSECKTQSTELCEPGCVC 400
+CP V V + +TNC G C +N C T GK +S C + +E GC C
Sbjct: 515 ECPVVKGVKFVGDGYTNCEASGIGRCEIKNGGCWKETRNGKTISACSNEVSE----GCKC 570
Query: 401 EGGFLRSKNGTCVSIDECHRELCPVNEVYSSCRQPNCNSDKCEYK 535
GF +C IDEC +L Y C+ +C + Y+
Sbjct: 571 PPGFKGDGIKSCEDIDECKEKL------YCQCKGCSCENTWGSYE 609
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/73 (27%), Positives = 25/73 (34%)
Frame = +2
Query: 176 EEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSE 355
++ C CAC ENGTC + + C +CAK CR C E
Sbjct: 457 QQMCGKDCACV------ENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRE 510
Query: 356 CKTQSTELCEPGC 394
C C C
Sbjct: 511 CDPDVCRNCWVSC 523
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +2
Query: 185 CEYGCACKIGYLRDENGTCIPQD-KCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECK 361
C+ C + L NGTC + CP + C +CAK CR C EC
Sbjct: 653 CQSACGKQCPCLT--NGTCCEKYCGCPKM-CKNRFRGCHCAKSQCRSRQCPCFAADRECD 709
Query: 362 TQSTELCEPGC 394
C GC
Sbjct: 710 PDVCRNCWVGC 720
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.1 bits (67), Expect = 0.78
Identities = 44/190 (23%), Positives = 66/190 (34%), Gaps = 6/190 (3%)
Frame = +2
Query: 80 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDE-EKC---EYGCACKIGYLRDENGTCIP 247
C N C G C P I N + FC E +C Y C +G C
Sbjct: 209 CEHNCLLLCHPGPCPPCPAIVPNAMCFCGSHRETRRCSHQRYSC----------SGKCNK 258
Query: 248 QDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKN 427
+ C CPV+ + C R ++ E G+ E + S + + C GG L+
Sbjct: 259 RLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGETMEERLCSERVFQCKREC-GGMLQCGK 317
Query: 428 GTCVSIDECHRELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCE--VGCVCKRGF 601
+C CH C + P D +++ CE +GC +
Sbjct: 318 HSCER--GCHAGKCGGCPLQGRRTCPCGKKDYPSLDCDAEAATCGSTCEKVLGCGRHKCP 375
Query: 602 RRADNGTCVD 631
R G+CV+
Sbjct: 376 ERCHRGSCVE 385
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 29.1 bits (62), Expect = 3.2
Identities = 38/144 (26%), Positives = 51/144 (35%), Gaps = 5/144 (3%)
Frame = +2
Query: 65 LCTATCPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCI 244
+C E CL + +C+E N + ++K ACK + C
Sbjct: 399 ICAGFRETTEPAVCLSEDIQTNECLENNGGCW-----QDKAANISACKDTF---RGRVC- 449
Query: 245 PQDKCPTVPCP--VNEYFTNC-AKGMCRQE-NCTELGKLSECKTQSTELCEPGCVCEGGF 412
+CP V V + +T+C A G R E N K S + GC C GF
Sbjct: 450 ---ECPVVKGVKFVGDGYTHCEASGSGRCEINNGGCWKDSRHGRTYSACTNDGCKCPDGF 506
Query: 413 LRSKNGTCVSIDEC-HRELCPVNE 481
C IDEC R C E
Sbjct: 507 KGDGVHKCEDIDECKERTACQCKE 530
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.1 bits (62), Expect = 3.2
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Frame = +2
Query: 281 NEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFL-RSKNGTCVSID--- 448
N+ +C + C++ C +L EC S C C C G F S T +S
Sbjct: 455 NDNVDSCKRCSCKKSKCLKL--YCECFA-SKVYCSESCSCRGCFNDHSHEETVLSTRNRI 511
Query: 449 ECHRELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGCVCKRGF 601
E L +V +C E+ S + P+ + GC CKR +
Sbjct: 512 ESRNPLAFAPKVIRTC------GPGLEFGEDSNATPASSRHKRGCNCKRSY 556
>10_01_0054 - 773395-774518,776957-777124,777455-778376
Length = 737
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 350 SECKTQSTELCEPGCV--CEGGFLRSKNGTCVSIDECHRELCP 472
SE K T L GCV C L +KNG C + CH ++ P
Sbjct: 147 SEGKGLYTSLYYAGCVTYCSDS-LSAKNGKCAGVGCCHVDIPP 188
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Frame = +2
Query: 278 VNEYFTNCAK---GMCRQEN--C---TELGK-LSECKTQSTELCEPGCVCEGGFLRSKNG 430
V + +T+C G C+ N C T+ GK +S C + ++ GC C GF
Sbjct: 454 VGDGYTHCEASGVGRCQINNGGCWKETKNGKTVSACSNEESK----GCKCPPGFKGDGIK 509
Query: 431 TCVSIDECHRELCPVNEVYSSCRQPNCNSDKCEYK 535
+C IDEC ++++ C+ +C + Y+
Sbjct: 510 SCEDIDECK------DKLFCQCKDCSCENTWGSYE 538
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 255 LSCGIQVPFSSLRYPILQAHPYSHFSSST 169
LSC PFS+L +P L + + HF +T
Sbjct: 483 LSCSALWPFSTLGWPDLSSEDFKHFYPAT 511
>06_03_0267 + 18970578-18972464
Length = 628
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +2
Query: 308 GMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGTCVSIDECHRELCPVNEVY 487
G+C + + + C T+S E C+ GG R K+ C + C +
Sbjct: 338 GLCIKHGGGKRCQKLNC-TKSAEGQSGFCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGG 396
Query: 488 SSCRQPNCN 514
C PNC+
Sbjct: 397 KRCTHPNCS 405
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 554 PSDEPCEVGCVCKRGFRRADNGTCVDE 634
P D C CK F ADN TC +E
Sbjct: 854 PLDAHCSWQLFCKEAFWNADNKTCPEE 880
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 27.9 bits (59), Expect = 7.3
Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 6/145 (4%)
Frame = +2
Query: 65 LCTATCPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCI 244
+C E CL + +C+E N + ++K ACK + C
Sbjct: 399 ICAGFRETTEPAVCLSEDIQTNECLENNGGCW-----QDKAANISACKDTF---RGRVC- 449
Query: 245 PQDKCPTVPCP--VNEYFTNC---AKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGG 409
+CP V V + +T+C G C N +T S GC C G
Sbjct: 450 ---ECPVVKGVKFVGDGYTHCEASGSGHCEINNGGCWKDSRHGRTYSA-CTNDGCKCPDG 505
Query: 410 FLRSKNGTCVSIDEC-HRELCPVNE 481
F C IDEC R C E
Sbjct: 506 FKGDGVHKCEDIDECKERTACQCKE 530
>11_08_0003 +
27492503-27492812,27492863-27493148,27495399-27495652,
27496645-27496830,27497042-27498117
Length = 703
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 392 CVCEGGF----LRSKNGTCVSIDECHRELCPVNEVYSSCRQPNCNSDKCE 529
C C G+ NG C+ IDECH L + +Y P N +C+
Sbjct: 264 CKCSEGYDGNPYLKGNGGCIDIDECH--LRTKSSIYGQL-YPCYNGSRCQ 310
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 254 KCPTVPCPVNEYFTNCAKGMCRQENCTELGK-LSECKTQSTELCEPGCVCE 403
KC V ++ YF NC++G + K ++EC+ S +C G C+
Sbjct: 340 KCANVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNS--ICGAGSTCK 388
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 639 SLSSTQVPLSALRNPLLQTQPTSQGSSEG 553
+LSS LS L+ PLLQ T+QG S G
Sbjct: 239 TLSSGPQKLSELQPPLLQPPGTTQGPSSG 267
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 409 APFTNAARLAQLCRLRFTFRQLAQLCAVLLTTHALSAVREV 287
APFT RL +L RLR + L ++CA + H L EV
Sbjct: 20 APFTLRHRL-RLRRLRASAATLREVCAGRVPEHVLQRAEEV 59
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 5 NRHEDVVSWIVVLAFVNIIVLCTATCPENE 94
N H + + F+ +I C A+CPENE
Sbjct: 274 NEHRSIGRVSGAIKFLALIGYCEASCPENE 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,687,076
Number of Sequences: 37544
Number of extensions: 432897
Number of successful extensions: 1352
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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