Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0561
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             36   0.030
At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing pro...    30   1.1  
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    29   2.6  
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    29   2.6  
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim...    29   3.5  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   4.6  
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    28   4.6  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    28   6.1  
At4g19960.1 68417.m02923 potassium transporter family protein si...    28   6.1  
At2g32340.1 68415.m03953 TraB family protein contains Pfam domai...    28   6.1  
At1g68140.1 68414.m07783 expressed protein                             28   6.1  
At2g14570.1 68415.m01632 SWIM zinc finger family protein               27   8.1  
At1g77770.2 68414.m09056 expressed protein                             27   8.1  
At1g77770.1 68414.m09055 expressed protein                             27   8.1  
At1g06580.1 68414.m00697 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 34/105 (32%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
 Frame = +2

Query: 230 NGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENC---TELGKLSECKTQS--TELCEPGC 394
           +G C P   CP   CP       C  G C    C   T  G  S CK  S  +  C P  
Sbjct: 298 SGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTF 357

Query: 395 VCEGGFLRSKNGTCVSIDECHRELCPVNE-VYSSCRQPNCNSDKC 526
            C   F + K   C S  +C +  CP  E   SSC    C S  C
Sbjct: 358 KCSSCFGKPKCPKC-SCWKCLK--CPDTECCRSSCCCSGCFSWLC 399



 Score = 34.7 bits (76), Expect = 0.053
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
 Frame = +2

Query: 377 LCEPGCVCEGGFLRSKNGTC---VSIDECHRELCP-VNEVYSSCRQPNCNSDKCEYKYRS 544
           LC P C C        + +C        C +  CP +   +S C++P+C S  C   ++ 
Sbjct: 300 LCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKC 359

Query: 545 QSCPSDEPCEVGCVCKRGFRRADNGTC 625
            SC     C   C C +  +  D   C
Sbjct: 360 SSCFGKPKCP-KCSCWKCLKCPDTECC 385


>At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 217

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 513 LQLGCRQLEYTSFTGHSSLWHSSIDTHVPFF 421
           ++ G + L +  FTG+SSL H   + HV FF
Sbjct: 1   MKRGIKHLCFNGFTGYSSLHHHYHEHHVDFF 31


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 468 HSSLWHSSIDTHVPFFDLKKPPSQTQPGSHSSVDCVLHSDNLPSSVQFS*RHMP 307
           H SL    +D++   F    PPS TQ  S    + VL S  + +S     RH P
Sbjct: 28  HHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGANSVLGSTRMDNSFVVLPRHKP 81


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 468 HSSLWHSSIDTHVPFFDLKKPPSQTQPGSHSSVDCVLHSDNLPSSVQFS*RHMP 307
           H SL    +D++   F    PPS TQ  S    + VL S  + +S     RH P
Sbjct: 28  HHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGANSVLGSTRMDNSFVVLPRHKP 81


>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222
          Length = 631

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 41/170 (24%), Positives = 61/170 (35%), Gaps = 7/170 (4%)
 Frame = +2

Query: 65  LCTATCPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCI 244
           +C+      E   CL G     +C+E N   +     E+K     ACK  +       C 
Sbjct: 394 ICSGFKERTEPGICLSGDIETNECLEANGGCW-----EDKKSNVTACKDTF---RGRVC- 444

Query: 245 PQDKCPTVPCP--VNEYFTNC-----AKGMCRQENCTELGKLSECKTQSTELCEPGCVCE 403
              +CP V       + +T+C     A+    Q  C    K     +  + L   GC C 
Sbjct: 445 ---ECPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWSETKKGLTFSACSNLETSGCRCP 501

Query: 404 GGFLRSKNGTCVSIDECHRELCPVNEVYSSCRQPNCNSDKCEYKYRSQSC 553
            GF +     C  IDEC  +        S+C+   CN   C+ K+    C
Sbjct: 502 PGF-KGDGLKCEDIDECKEQ--------SACQCDGCN---CKNKWGGFEC 539


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 56  IIVLCTATCPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEY 193
           I+V+C A     E    ++  C  +KC   +D++  +L D E+C Y
Sbjct: 159 IVVVCVAYSTSLEIVHAVRKSC-VRKCTNGDDLVLLELSDVEECMY 203


>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 170 VDEEKCEYGCACKIGYLRDENGTCI-PQDKCPTVPC-PVNEYFTNCAK 307
           +  ++C+YG  CK  + R+E    +  QD  P  P  P+  ++    K
Sbjct: 235 IKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGK 282


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 492 LEYTSFTGHSSLWHSSIDTHV--PFFDLKKPPSQTQPGSHSSVDCVLHSDNLPSSVQF 325
           L Y S T  ++ +H++ + +   P F L  P S + P S SS    LHS   PSS  F
Sbjct: 324 LPYPSPTAQTATYHNTNNPYSSSPSFSLN-PSSSSYPTSTSSPS-FLHSHYTPSSTSF 379


>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 355 FRQLAQLCAVLLTTHALSAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFA 203
           F Q   +  V+L T  L  +  + + W  H W LVL +T   F  ++SYF+
Sbjct: 485 FSQWTAVVLVMLVTTLLMVLIMLLV-WHCH-WILVLIFTFLSFFVELSYFS 533


>At2g32340.1 68415.m03953 TraB family protein contains Pfam domain
           PF01963: TraB family
          Length = 272

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = -1

Query: 576 TSQGSSEGHDCDLYLY--SHLSELQL-GCRQLE 487
           T + ++EG  CD+YL   +H+S++ L  CR++E
Sbjct: 85  TCESTAEGGSCDVYLVGTAHVSQVILESCREVE 117


>At1g68140.1 68414.m07783 expressed protein
          Length = 334

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 239 CIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECK 361
           C  Q K  T+  P  + F N  K +C QENC   G   E +
Sbjct: 123 CRGQVKGWTIVQPARD-FLNLKKRICMQENCVYAGTFKELR 162


>At2g14570.1 68415.m01632 SWIM zinc finger family protein
          Length = 435

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 567 GSSEGHDCDLYLYSHLSELQLGCRQLEYTSFTGHSSLW 454
           G  E  DC  Y+  H+      CR+ E T  +   +LW
Sbjct: 383 GRCEVLDCGKYVSLHMGMKTCACRKWEMTGLSCRHALW 420


>At1g77770.2 68414.m09056 expressed protein
          Length = 264

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 25/92 (27%), Positives = 34/92 (36%)
 Frame = +2

Query: 119 CRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTN 298
           CRP  C   +    C  +D+ +  YG     G        C  Q K  TV      +F N
Sbjct: 53  CRPYMCATSSRFANC--LDQYRKSYGNE-NSGQPELLCPLCRGQVKGWTVVKDARMHF-N 108

Query: 299 CAKGMCRQENCTELGKLSECKTQSTELCEPGC 394
             +  C Q+NC+ LG   + K    E     C
Sbjct: 109 SKRRTCMQDNCSFLGNFRKLKKHMKEKHPHAC 140


>At1g77770.1 68414.m09055 expressed protein
          Length = 265

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 25/92 (27%), Positives = 34/92 (36%)
 Frame = +2

Query: 119 CRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTN 298
           CRP  C   +    C  +D+ +  YG     G        C  Q K  TV      +F N
Sbjct: 53  CRPYMCATSSRFANC--LDQYRKSYGNE-NSGQPELLCPLCRGQVKGWTVVKDARMHF-N 108

Query: 299 CAKGMCRQENCTELGKLSECKTQSTELCEPGC 394
             +  C Q+NC+ LG   + K    E     C
Sbjct: 109 SKRRTCMQDNCSFLGNFRKLKKHMKEKHPHAC 140


>At1g06580.1 68414.m00697 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 500

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 587 KHNRLRRVRPRDTTVTCICTRIYQNYNWAVDSSSTLRSRDIVPYGIHR*IRTFRFLI 417
           KH +   +RP   T   + TR++ +  W V  S+ + S D++  GI   + TF  LI
Sbjct: 208 KHMKKMGIRPDVVTYNSLITRLFHSGTWGV--SARILS-DMMRMGISPDVITFSALI 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,068,388
Number of Sequences: 28952
Number of extensions: 354211
Number of successful extensions: 1139
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)