Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0560
         (707 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   4.1  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.4  
AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    23   7.1  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 9/43 (20%), Positives = 21/43 (48%)
 Frame = +2

Query: 533 YTYVNQWLAVFKTYDTDQSGFIDEGELSKALTQMGFRFSPEFI 661
           + + + WL +  TY T+QS  I+      ++  +   + P+ +
Sbjct: 180 WKFNSTWLGLATTYGTEQSAIIERSSDVVSVYMLDNNYHPKLV 222


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 9/43 (20%), Positives = 21/43 (48%)
 Frame = +2

Query: 533 YTYVNQWLAVFKTYDTDQSGFIDEGELSKALTQMGFRFSPEFI 661
           + + + WL +  TY T+QS  I+      ++  +   + P+ +
Sbjct: 180 WKFNSTWLGLATTYGTEQSAIIERSSDVVSVYMLDNNYHPKLV 222


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 341 TPQVQQWFRAVDKDQS 388
           TP+VQQWF  + + +S
Sbjct: 163 TPEVQQWFEELKEKRS 178


>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 551 WLAVFKTYDTDQSGFIDEGELSKALTQMGFR 643
           ++A+  TYD  +SG ++   ++  L   G+R
Sbjct: 258 FMALVDTYDVKRSGLLNFCAVALGLNDQGYR 288


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,997
Number of Sequences: 2352
Number of extensions: 14710
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)