Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0559
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CD07D Cluster: hypothetical protein TTHERM_0019...    37   0.36 
UniRef50_UPI00006CBF3C Cluster: hypothetical protein TTHERM_0031...    33   5.9  

>UniRef50_UPI00006CD07D Cluster: hypothetical protein
           TTHERM_00191520; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00191520 - Tetrahymena
           thermophila SB210
          Length = 1182

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +1

Query: 286 LNELFKIILLQF*YYYINFKHHNIT-SML*KNFNLRVTIQTFFNVVKYFQMTN*EIIDLI 462
           + E    IL Q  +  INF  + +  S +   FN+   IQ FFN++K     + ++I  +
Sbjct: 425 ITEYLYQILFQDNFQVINFLFYLVKLSKVIGKFNILFLIQNFFNLIKECNQNDKDLISTV 484

Query: 463 FILMKINVNNHNSLDYCT*YNLK*RLGNIIYSLCISQSLQTEIQ 594
                +N+   N ++Y + Y    +L   I SL I + ++ +I+
Sbjct: 485 QSRASLNIEQQNYVNYDSEY----QLNQQIASLRIPRQIENQIR 524


>UniRef50_UPI00006CBF3C Cluster: hypothetical protein
           TTHERM_00310400; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00310400 - Tetrahymena
           thermophila SB210
          Length = 1106

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 604 TLLTEFLSVEIVRYIVNKLYYRASILSCIKYNNQENYDCLR 482
           TLL   L  EIV Y +NK   R+ I+  + + N+ENY  +R
Sbjct: 113 TLLNSILGDEIVPYYINK-SNRSQIIIQVGFQNEENYSIVR 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,661,109
Number of Sequences: 1657284
Number of extensions: 7388037
Number of successful extensions: 12239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12235
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)