Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0559
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    31   0.59 

>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 406 FFNVVKYFQMTN*EIIDLIFILMKINVNNHNSLDYCT 516
           FFN   YF   + E      +L   +++NHN LDY T
Sbjct: 12  FFNYPPYFTFVSVEPFSCFHLLAFYDIHNHNLLDYST 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,677,208
Number of Sequences: 37544
Number of extensions: 151985
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)