Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0559
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1591| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-06)                  30   1.9  
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_1591| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-06)
          Length = 286

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/67 (28%), Positives = 38/67 (56%)
 Frame = +1

Query: 196 NISVINLGNCRVLSLSQGLHLIVNLAIYS*LNELFKIILLQF*YYYINFKHHNITSML*K 375
           N+ V ++   R +  S   H+++NLAI   L  L  + ++ F  +Y++F+++ + S+   
Sbjct: 24  NLLVCSVVRSRTVRSSATNHILLNLAIADILGCLVNLPIM-FVTFYVDFQNNFLESLSDA 82

Query: 376 NFNLRVT 396
           +F L VT
Sbjct: 83  HFVLTVT 89


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 592 EFLSVEIVRYIVNKLYYRASILSCIKYNNQE 500
           E +  E+ +Y  N LYY   +L   +YNN E
Sbjct: 347 EHIITEVKKYSNNDLYYSPDVLIVNRYNNFE 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,206
Number of Sequences: 59808
Number of extensions: 212844
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)