Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0557
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...   103   2e-23
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    28   1.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.3  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   7.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.6  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   9.6  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score =  103 bits (248), Expect = 2e-23
 Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
 Frame = +3

Query: 117 YLLVYNAAQTLGW-SYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEILHAAVGLV 293
           YL +YN      W S +L   L+  + +     + E    V   Q  A+ E+ H+  GLV
Sbjct: 9   YLKLYNVISCFLWMSVLLRTGLIWGITKDTAVVFHETNTLVRWVQTLAIAEVFHSIFGLV 68

Query: 294 PSSVFVVLMQVYSRVFLVCGALLATQGATT-SPXLPLCILAWSITEIIRYAYYALNLVDI 470
            SS    ++QV SR++LV G           SP     I+AWSITEIIRYA+YA NL   
Sbjct: 69  SSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSITEIIRYAFYAFNLNGD 128

Query: 471 VPSSLTFLRYSTFLVMYPLGITGELLCMYHS 563
           +P+ LT+LRY+TFL++YP+G   E L +  S
Sbjct: 129 IPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 32/140 (22%), Positives = 56/140 (40%)
 Frame = +3

Query: 228 WTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPXLPLCI 407
           W  +IF     L +  +   +   SVF V++ +      VC   +   GA  S    +CI
Sbjct: 94  WGPLIFSLVIALALALSTDKIERESVFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCI 153

Query: 408 LAWSITEIIRYAYYALNLVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKK 587
           L +S   ++     A  +   VP  L F+R    + MY   +   +  + +S   +  KK
Sbjct: 154 LGYSSFPLM----IASIVCAFVP--LIFIRIPVIVAMYAWTLFAAMGVLQNS--NLSNKK 205

Query: 588 LFTISMPNAWNFAFNYYYFL 647
           L  +     + F+  +  FL
Sbjct: 206 LLAVYPLFLFYFSLAWIIFL 225


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 622 KFQAFGIEMVKSFFSKISSNEWYMQSSSPVIPRGYITRNVEY-LKNVSD 479
           +F A  +  V+S   K+ S  +Y+Q S+    R Y+     Y LK++ D
Sbjct: 463 EFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIFD 511


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 586 NFSPSQCRMLGISRLTI 636
           NF+PSQ ++LGI+  TI
Sbjct: 168 NFTPSQLQLLGITNSTI 184


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 583 FSKISSNEWYMQSSSPVIPRGYITRNVEYLKNVSDEGTIST 461
           ++K+S+ EW MQS S      ++T ++ Y ++V      S+
Sbjct: 127 YAKVSTLEWDMQSQS------FVTNSLHYYEDVKSSNICSS 161


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 181 YIF*TVLWMLFGVRSSGLSLYF 246
           Y F T L  LFG+R   L+L+F
Sbjct: 97  YFFSTALLKLFGLRKIALTLHF 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,630
Number of Sequences: 5004
Number of extensions: 62173
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)