Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0557
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 107 1e-23
01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271... 103 1e-22
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902... 82 4e-16
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698... 76 2e-14
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 71 1e-12
01_01_0343 + 2744123-2744311,2745238-2745291,2745517-2745587,274... 48 5e-06
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 42 4e-04
01_01_0342 + 2740699-2740839,2742021-2742085,2742221-2742332,274... 40 0.001
01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012 40 0.002
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 37 0.012
01_01_0337 + 2717104-2717174,2717266-2717395 37 0.016
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 28 5.7
04_04_0599 - 26516854-26517452,26517547-26517963,26518044-265183... 28 7.5
12_02_1264 + 27430536-27430811,27431085-27431198,27431496-274316... 27 9.9
08_02_1156 - 24760332-24761530,24762757-24763648 27 9.9
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 107 bits (256), Expect = 1e-23
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 14/201 (6%)
Frame = +3
Query: 96 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEIL- 272
G + ++YL +YN +GW+ +L + L++ +A ++ I+ ++ Q AA+LE+L
Sbjct: 5 GSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAILEVLV 64
Query: 273 ------------HAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPXLPLCILAW 416
GLV S V L Q+ R+F+ G L + + + ++ W
Sbjct: 65 FPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICW 124
Query: 417 SITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKLF 593
I E+ RY++Y + PS L +LRYSTF+ +P+G+ E+ Y L + + +
Sbjct: 125 CIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEKY 184
Query: 594 TISMPNAWNFAFNYYYFLIFY 656
+ MPN WNF+FNY+Y +F+
Sbjct: 185 CLRMPNKWNFSFNYFYANVFF 205
>01_01_0338 +
2718212-2718251,2718519-2718607,2718997-2719050,
2719201-2719271,2719375-2719456,2719561-2719657,
2719752-2719873
Length = 184
Score = 103 bits (247), Expect = 1e-22
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Frame = +3
Query: 258 VLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPXLPLCILAWSITEIIR 437
V +ILH VGLV S V L Q+ SR+FL G L + + + +++WSITEIIR
Sbjct: 5 VAQILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIR 64
Query: 438 YAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKLFTISMPNA 614
Y+++ + PS L +LRYSTF+V+YP GI+ E+ +Y +L + + + + MPN
Sbjct: 65 YSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNK 124
Query: 615 WNFAFNYYY 641
WNF+F++ Y
Sbjct: 125 WNFSFDFSY 133
>04_03_0113 +
11388585-11388655,11388741-11388852,11390182-11390235,
11390386-11390456,11390560-11390641,11390741-11390837,
11390914-11391053
Length = 208
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +3
Query: 405 ILAWSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFE 581
+++WSITEIIRY+++ + PS L +LRYSTF+V+YP GI+ E+ +Y +L +
Sbjct: 72 VISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKA 131
Query: 582 KKLFTISMPNAWNFAFNYYY 641
+ + + MPN WNF+F+++Y
Sbjct: 132 SEKYCLRMPNKWNFSFDFFY 151
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 96 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLE 266
G ++ ++YL VYN A GW+ +L+ ++ L +A ++ ++ + Q AA LE
Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLE 61
>08_02_0558 +
18668856-18668926,18669064-18669175,18669834-18669887,
18670121-18670191,18670291-18670372,18670463-18670559,
18670928-18670998
Length = 185
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +3
Query: 405 ILAWSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFE 581
+++W ITE+ RY +Y + PS L +LRYSTF+V P+G E+ +Y L +
Sbjct: 72 LISWCITEVTRYCFYGMKESFGFTPSWLLWLRYSTFIVCLPVGTVSEVGLIYIVLPFMKA 131
Query: 582 KKLFTISMPNAWNFAFNYYYFLIFY 656
+ + MPN WNF+FNY+Y IF+
Sbjct: 132 SGKYCLRMPNKWNFSFNYFYASIFF 156
Score = 34.3 bits (75), Expect = 0.087
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 111 KIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLE 266
++YL YN +GW + W ++ L +A ++ ++ ++ Q AA++E
Sbjct: 10 RLYLSFYNWIVFIGWVQVSWSMILALLENGYEAVYAAVEQHLLFAQTAAIME 61
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +3
Query: 405 ILAWSI----TEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLD 569
I +W I ++IRY+++ + PS L +LRYSTF+V YP+G+ E+ +Y +
Sbjct: 180 ITSWKIYYNSLQVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFP 239
Query: 570 EIFEKKLFTISMPNAWNFAFNYYYFLIF 653
+ + + I MPN WNF+F+Y+YF F
Sbjct: 240 FMKASEKYCIGMPNKWNFSFDYFYFSTF 267
>01_01_0343 +
2744123-2744311,2745238-2745291,2745517-2745587,
2745704-2745785,2746242-2746340
Length = 164
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 342 LVCGALLATQGATTSPXLPLCILAWSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVM 518
+ CG + T TS +++W ITE+ RY++ + PS L +LRYSTF+V
Sbjct: 58 MFCGGQIHTHIFVTS-----LLISWCITEVTRYSFNGMKESFGFTPSWLLWLRYSTFIVC 112
Query: 519 YPLGITGELLCMY 557
+P+G+ E+ +Y
Sbjct: 113 FPIGMVSEVGLVY 125
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Frame = +3
Query: 498 YSTFLVMYPLGITGELLCMYHSLD--EIFEKKLFTISMPNAWNFAFNYYYFLIFY 656
YSTF+V +P+G+ E++ +Y +L E+ ++ + W+F+FNY+Y +F+
Sbjct: 137 YSTFIVCFPVGMVCEVVLIYIALPFMEMKAQQYQASEKSDKWSFSFNYFYANLFF 191
>01_01_0342 +
2740699-2740839,2742021-2742085,2742221-2742332,
2742388-2742435
Length = 121
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = +3
Query: 111 KIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEILHAAVGL 290
++YL VYN +GW + W ++ L + +A ++ ++ ++ Q AA++E+ + V L
Sbjct: 55 RLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQTAAIMELYNFFVSL 114
Query: 291 V 293
+
Sbjct: 115 L 115
>01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012
Length = 76
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +3
Query: 78 MKSNTSGLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAA 257
M N SG + ++YL +YN +GW + W ++ L +A ++ ++ ++ Q AA
Sbjct: 1 MAGNASG--VRRLYLSLYNWIVFIGWVQVSWFMILALLKNGYEAVYAAVEQHLLFAQTAA 58
Query: 258 VLEILHAAVGLV 293
++E+ + V L+
Sbjct: 59 IMELYNHFVSLL 70
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 RYSTFLVMYPLGI-TGELLCMYHSLDEIFEKKLFTISMPNAWNFAFNYYYFLI 650
RY+ F+ +YP+G+ GE+ MY +L + E+KL++ F+ +Y+ FL+
Sbjct: 122 RYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYSGFF---GKFSMSYHSFLV 171
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 111 KIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEILHAAVG 287
++YLL YN+ Q LGW + +L+ L + V A+LE +HAA+G
Sbjct: 6 QLYLLSYNSVQALGW----FVALLRLLPCLAPPSSVHSSYAVAGDLTWAILETIHAAIG 60
>01_01_0337 + 2717104-2717174,2717266-2717395
Length = 66
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 96 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEI 269
G ++ ++YL VYN A GW+ +L+ ++ L +A ++ ++ + Q AA LE+
Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEV 62
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 632 VKREIPSIRH*DGEKFFLEDFIQ*VVHAEQLSSNTEGIHHEKRGIP 495
V RE+ S+ H E F E I+ + Q+++ + +H E R IP
Sbjct: 706 VMREVASVLHGLRESFDEEQIIRRSNESIQITNGQDSVHSEARPIP 751
>04_04_0599 -
26516854-26517452,26517547-26517963,26518044-26518394,
26518651-26518748,26518875-26518945,26519638-26520318
Length = 738
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 628 NAKFQAFGIEMVKSFFSKISSNEWYMQ 548
+A F F +++ FF K + N+W+ Q
Sbjct: 313 HALFNLFSVQLRLGFFDKTNENQWFTQ 339
>12_02_1264 +
27430536-27430811,27431085-27431198,27431496-27431630,
27431722-27431823,27432290-27432361,27432427-27432526,
27433122-27433204,27433689-27433787,27433899-27433949,
27434088-27434210,27434431-27434532
Length = 418
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 351 GALLATQGATTSPXLPLCILAWSITEIIRYAYYALNLVDIVP 476
G +L T + P + L + AW E+ +Y Y A VD +P
Sbjct: 235 GPMLVTHWGLSGPVV-LRLSAWGARELHQYNYQAKLTVDFIP 275
>08_02_1156 - 24760332-24761530,24762757-24763648
Length = 696
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 446 VGISYDFSYRPGEYTQRQPWTCSRS 372
+GISY F PG Y + TC RS
Sbjct: 36 IGISYPFGVEPGCYHEGFNLTCDRS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,155
Number of Sequences: 37544
Number of extensions: 349903
Number of successful extensions: 875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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