Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0557
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               31   1.1  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          29   4.4  
SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   5.8  
SB_7567| Best HMM Match : HYR (HMM E-Value=1.8)                        28   7.7  
SB_2219| Best HMM Match : 7tm_2 (HMM E-Value=0.81)                     28   7.7  

>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 539 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYT 402
           S N   I+   +G P+KR+        IES+  + YD S RPGE T
Sbjct: 372 SRNPTKINSLSKGRPRKRRI----ATAIESITNLGYDLSDRPGELT 413


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 574 ISSNEWYMQSSSPVIPRGYITRNVEYLKNVSDEGT 470
           I+SN W    SSPV  +  I+R  +++ N++ E T
Sbjct: 196 INSNPWAHGDSSPVAEKTRISRMRKFITNIASEVT 230


>SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 376 APCVASKAPHTRNTLEY-TCIRTTNTLDGTKPTAACKISNTAAF*NIMTVHLISLQK 209
           A C  + A  +    ++ TC   T T   TKP  A   +NTA   N    H++  Q+
Sbjct: 11  ATCCTNTATSSNTKRQHATCRTNTATSSNTKPQHATCCTNTATSSNTKQQHVVQTQQ 67


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 599 DGEKFFLEDFIQ*VVHAEQLSSNTEGIHHEKRGIPQK 489
           D EK FLE  +    H +++S +T G H     +P+K
Sbjct: 387 DDEKNFLESLLP---HDKEVSKSTSGFHRAVHSLPEK 420


>SB_7567| Best HMM Match : HYR (HMM E-Value=1.8)
          Length = 380

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 546 LCMYHSLDEIFEKKLFTISMPNAWNFAFNYYY 641
           +C+  S D +F+       +PN  N+ FN+Y+
Sbjct: 309 ICVELSTDLVFQSHHLDSGIPNTANYDFNWYF 340


>SB_2219| Best HMM Match : 7tm_2 (HMM E-Value=0.81)
          Length = 148

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 126 VYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVII 242
           VYNA   L   Y+   +LV  ++  +   W  + WTV++
Sbjct: 35  VYNADMNLKLCYIFAWALVIVVSIYMGYLWYRVTWTVVV 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,626,726
Number of Sequences: 59808
Number of extensions: 437885
Number of successful extensions: 1378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)