Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0557
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-14|AAB69975.2| 218|Caenorhabditis elegans Hypothetical... 157 9e-39
Z50874-9|CAA90769.1| 202|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z74026-4|CAA98416.5| 774|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF101307-3|AAC69212.2| 315|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81038-12|CAB02758.2| 380|Caenorhabditis elegans Hypothetical p... 28 6.7
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 28 6.7
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 28 6.7
Z70034-9|CAA93849.1| 159|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AF022985-14|AAB69975.2| 218|Caenorhabditis elegans Hypothetical
protein T15B7.2 protein.
Length = 218
Score = 157 bits (380), Expect = 9e-39
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 2/180 (1%)
Frame = +3
Query: 117 YLLVYNAAQTLGWSYMLWQSLVHFLNR-TLDAFWSEIKWTVIIFQNAAVLEILHAAVGLV 293
YL+ YN Q LGWS +L ++++ N T + +++ + IFQ AA+LE++HA VGLV
Sbjct: 6 YLVAYNVLQILGWSAILVKTVLGLANGLTWPQLYESVEFELKIFQTAAILEVIHAIVGLV 65
Query: 294 PSSVFVVLMQVYSRVFLVCGALLATQGATTSPXLPLCILAWSITEIIRYAYYALN-LVDI 470
S V MQV SRV LV L A S +PL ++AWS+TE+IRY++YAL+ L
Sbjct: 66 RSPVGTTAMQVTSRVVLVWPILHLCSTARFSIGVPLLLVAWSVTEVIRYSFYALSVLKQP 125
Query: 471 VPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKLFTISMPNAWNFAFNYYYFLI 650
+P L +LRY+ F V+YP+G++GELL ++ SL+E+ EKK+ T+ MPN N ++++ LI
Sbjct: 126 IPYFLLYLRYTLFYVLYPMGVSGELLTLFASLNEVDEKKILTLEMPNRLNMGISFWWVLI 185
>Z50874-9|CAA90769.1| 202|Caenorhabditis elegans Hypothetical
protein R10E4.9 protein.
Length = 202
Score = 46.0 bits (104), Expect = 2e-05
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +3
Query: 213 WSEIKWTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFL--VCGALLATQGATTS 386
+ EI W ++ + L+I + L S+ V +QV R+ + V +++ + A S
Sbjct: 38 YPEIMWFLLFITSLQYLDIPFSFF-LTKSNPVAVFVQVSGRLLVLWVASHMVSWKYAAFS 96
Query: 387 PXLPLCILAWSITEIIRYAYYALNLVDIVPSSLTFLRYSTFLVMYPLGITGELL 548
+ + ++E+ R YY N + SLT+LRY+ F V+YP+G T E L
Sbjct: 97 -----LVAVYLLSELCRGPYYLSNCLGTPNRSLTWLRYNAFKVLYPVGFTCEAL 145
>Z74026-4|CAA98416.5| 774|Caenorhabditis elegans Hypothetical
protein B0240.2 protein.
Length = 774
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 625 AKFQAFGIEMVKSFFSKISSNEWYMQSSSPVIPRGYITRNVEYLKNVSDEG 473
A FQA + K F+ I + +W ++ +PVI +N+ SD+G
Sbjct: 329 AYFQAIEFAVKKIFYVHIEAAKWALKKVNPVIEEIKKAKNIRAEYQSSDDG 379
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +3
Query: 102 SIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAF 212
S+GK+ +V +A Q+ Y+LWQ+++ F+ + + +F
Sbjct: 214 SVGKL-AIVLSAKQSKPQKYILWQTMIVFIFKMVTSF 249
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -1
Query: 361 SKAPHTRNTLEYTC-----IRTTNTLDGTKPTAACKISNT 257
S APH + YTC + TT+T+ TKPT T
Sbjct: 232 STAPHIKYDTSYTCASTTTVSTTSTVTTTKPTTTTTTPTT 271
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -3
Query: 248 LKYNDSPLDLTPKSIQSTVQKMY**LP*HVRPSKSLSGVIDKKINLSNRKSRGVAFHCLV 69
L+ N++P + PK ++S + + + PS LS ++ KK+ V+F C
Sbjct: 50 LEENNNPRPMLPKQMESRCKHVK-----DINPS-DLSQLLQKKLKCMTCHD-SVSFSCAH 102
Query: 68 GHCLN*YKTLCLK 30
C+N K+ C K
Sbjct: 103 QDCINSLKSSCCK 115
>AF101307-3|AAC69212.2| 315|Caenorhabditis elegans Hypothetical
protein F41H8.2 protein.
Length = 315
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -3
Query: 164 HVRPSKSLSGVIDKKINLSNRKSRGVAFH 78
+VRP K +S +I KKI+ ++ +S G+A+H
Sbjct: 288 NVRPKKKVSSIIVKKISTAHTQS-GLAWH 315
>Z81038-12|CAB02758.2| 380|Caenorhabditis elegans Hypothetical
protein C25A1.3 protein.
Length = 380
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 213 KKHPKYGSKNVLMTAIACKTIQEFERRYRQ 124
KK G+K+V+M +A +IQ+ E RY+Q
Sbjct: 70 KKWDIAGAKDVVMADVADVSIQQAEERYKQ 99
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -3
Query: 539 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYTQRQPWTCSRSLCCQ 360
+++ EG K+ I Q GY V G SY Y + P C+ C
Sbjct: 141 NNDKEGWCRNKKYIEQTEN--GYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNC-- 196
Query: 359 *SSTYQKHS*IHLHKNYKY 303
T ++ IH HKNY++
Sbjct: 197 -QFTTREARYIHFHKNYRH 214
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -3
Query: 539 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYTQRQPWTCSRSLCCQ 360
+++ EG K+ I Q GY V G SY Y + P C+ C
Sbjct: 141 NNDKEGWCRNKKYIEQTEN--GYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNC-- 196
Query: 359 *SSTYQKHS*IHLHKNYKY 303
T ++ IH HKNY++
Sbjct: 197 -QFTTREARYIHFHKNYRH 214
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -3
Query: 539 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYTQRQPWTCSRSLCCQ 360
+++ EG K+ I Q GY V G SY Y + P C+ C
Sbjct: 141 NNDKEGWCRNKKYIEQTEN--GYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNC-- 196
Query: 359 *SSTYQKHS*IHLHKNYKY 303
T ++ IH HKNY++
Sbjct: 197 -QFTTREARYIHFHKNYRH 214
>Z70034-9|CAA93849.1| 159|Caenorhabditis elegans Hypothetical
protein C18E9.9 protein.
Length = 159
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 210 FWSEIKWTVIIFQNA-AVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGAL 359
FW +++ F A AV+ ++ + S FV++ YS F VC AL
Sbjct: 37 FWFICLTSILEFLAAIAVVAVVFLDLTFTRSGQFVIIELAYSGAFCVCSAL 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,477
Number of Sequences: 27780
Number of extensions: 332089
Number of successful extensions: 863
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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