Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0557
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   1.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 434 KICLLRSQSGRYCTLIADVFEVFH 505
           ++C+L  Q+ R C LI D+F+  H
Sbjct: 35  EVCVL--QANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 434 KICLLRSQSGRYCTLIADVFEVFH 505
           ++C+L  Q+ R C LI D+F+  H
Sbjct: 18  EVCVL--QANRACILIKDLFDNVH 39


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 87  NTSGLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFL 191
           NTS +S+ K      + +  +GWS  L  SLV+ +
Sbjct: 377 NTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYII 411


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 199  LWMLFGVRSSGLSLY 243
            +W+ FG R   L LY
Sbjct: 1002 VWLFFGCRQRNLDLY 1016


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 328 IQECFWYVELYWQHKERLQV 387
           IQ C  Y+E +  HK++L++
Sbjct: 127 IQICPIYIESFSYHKQKLRL 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,017
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)