Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0557
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10480.1 68418.m01214 protein tyrosine phosphatase-like prote...   126   1e-29
At5g59770.1 68418.m07491 expressed protein                             56   2e-08
At1g51340.2 68414.m05773 MATE efflux family protein contains Pfa...    29   2.7  
At1g51340.1 68414.m05774 MATE efflux family protein contains Pfa...    29   2.7  
At5g32600.1 68418.m03877 hypothetical protein                          27   8.3  

>At5g10480.1 68418.m01214 protein tyrosine phosphatase-like protein,
           putative (PAS2) identical to PEPINO/PASTICCINO2 protein
           GI:24411193, GI:24575153 from [Arabidopsis thaliana];
           contains Pfam:04387: protein tyrosine phosphatase-like
           protein
          Length = 221

 Score =  126 bits (304), Expect = 1e-29
 Identities = 65/183 (35%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
 Frame = +3

Query: 105 IGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEILHAAV 284
           + ++YL +YN     GW+ +L+ ++        +  +  I+  + + Q AAVLEILH  V
Sbjct: 8   VRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLV 67

Query: 285 GLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPXLPLCILAWSITEIIRYAYYAL-NL 461
           GLV S V   L Q+ SR+FL  G L +     +   +   +++WSITEIIRY+++     
Sbjct: 68  GLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEA 127

Query: 462 VDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKLFTISMPNAWNFAFNYYY 641
           +   PS   +LRYS+FL++YP GIT E+  +Y +L  I   +++++ MPN  NF+F+++Y
Sbjct: 128 LGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFY 187

Query: 642 FLI 650
             I
Sbjct: 188 ATI 190


>At5g59770.1 68418.m07491 expressed protein
          Length = 199

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/85 (32%), Positives = 46/85 (54%)
 Frame = +3

Query: 192 NRTLDAFWSEIKWTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQ 371
           N+T+ + ++   + + +FQ AA+LE+LH A+G+VPS     LMQ   R   +    +  Q
Sbjct: 85  NKTIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGRTHFILA--IVGQ 142

Query: 372 GATTSPXLPLCILAWSITEIIRYAY 446
               SP L + ++AW I E +   Y
Sbjct: 143 IKEDSPWLSITLVAWCIGEAVLLVY 167


>At1g51340.2 68414.m05773 MATE efflux family protein contains Pfam
           profile PF01554: MatE
          Length = 515

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 306 FVVLMQVYSRVFLVC--GALLATQGATTSPXLPLCILAWSITEIIRYAY 446
           F++LM+V +  F V    +L A +G+T+     +C+  W  T ++   Y
Sbjct: 313 FLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGY 361


>At1g51340.1 68414.m05774 MATE efflux family protein contains Pfam
           profile PF01554: MatE
          Length = 509

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 306 FVVLMQVYSRVFLVC--GALLATQGATTSPXLPLCILAWSITEIIRYAY 446
           F++LM+V +  F V    +L A +G+T+     +C+  W  T ++   Y
Sbjct: 307 FLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGY 355


>At5g32600.1 68418.m03877 hypothetical protein
          Length = 388

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 117 YLLVYNAAQTLGWSYMLWQSLVHFLNRTLDAFWSEIKWTVIIFQNAAVLEI 269
           Y L Y  +  +  S +  +SL+H L   +  + SEI  T+  F+N  +LEI
Sbjct: 43  YTLEYVKSYNIALSQITTRSLIHLLGILVQTYESEIDITLAHFRN--LLEI 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,709
Number of Sequences: 28952
Number of extensions: 302514
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)