Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0556
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.28 
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   4.6  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   6.0  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   8.0  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 22/87 (25%), Positives = 43/87 (49%)
 Frame = -2

Query: 453 VDLFLHIVLFFTF*VLCICFNFIFSNHLPVYNIIFINLLESRYSINFSIFYTKSISPGIT 274
           + LF  ++LFF F +  + F+F FS  L   + IFI    S   ++F  F+   +   ++
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFS-FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168

Query: 273 WRYGFFFVTFNSIVVSPISLSFISTIN 193
           + +    +   +I+  P+ L   ST++
Sbjct: 169 FLFSLSHLLSLAILFLPLLLRVFSTLS 195


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 354 IFINLLESRYSINFSIFYTKSISPGITWRYGFFFVTFNSIVVSPI 220
           +++N  E  Y+ +F  F+ +  +PG      F  V+FN++ V+P+
Sbjct: 533 LYVNNGEKTYTNDF--FFLQGATPGQISFAAFQGVSFNNVTVTPL 575


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 609 LWKIRLSSLSTRFFEL*AYCENFLGLKDSV 698
           LW    +SL T F     Y EN LGL   V
Sbjct: 323 LWNAAYNSLETAFLHTATYQENTLGLAAGV 352


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 193 VYSAYKGKADWAHYYGIKSDEEKSIPPGY-AWANTLGIKNA-KVYRISGFKKVDEYDIVD 366
           +Y A   KAD +    I+S   K+  PGY +W+N   +K+A K Y  S  K  +  D ++
Sbjct: 545 IYRAIAEKADKSVLQSIQSKFPKATVPGYDSWSNE-DLKSALKEYGDSIGKVFNRKDAIE 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,829
Number of Sequences: 5004
Number of extensions: 60058
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)