Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0556
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    28   6.3  
01_05_0513 - 22864657-22867899                                         28   6.3  

>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 76  WHAFVRKRTKP-IPEDKAILWKRRLSFAYALFAWNAFGLVVYSAYK 210
           WHA VR+R  P +   +  +    +  A  L  W A+G   Y  YK
Sbjct: 35  WHAQVRRRLLPLLRRQRMAVLAAPVVAAVLLLTWAAYGEAQYVLYK 80


>01_05_0513 - 22864657-22867899
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 91  RKRTKPIPEDKAILWKRRLSFA 156
           RKRT+ +P D +  W  RL FA
Sbjct: 58  RKRTRTVPRDLSPQWHERLEFA 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,347
Number of Sequences: 37544
Number of extensions: 323971
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)