Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0556
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        31   1.2  
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)                     28   6.4  
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 28   6.4  
SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)         28   6.4  
SB_16854| Best HMM Match : UL97 (HMM E-Value=4.9)                      28   6.4  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 172 WNAFGLVVYSAYKGKADWAHYYGIKSDEEKSI 267
           WN+        YKG   WAH  GI  D  K +
Sbjct: 745 WNSKTFARLGVYKGHKGWAHSVGISKDSSKLV 776


>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +2

Query: 170  PGMLLV**FIVLIKERLIGLTTMELKVTKKNP 265
            P +LLV  F+VLI   L+ LTT+ L VTK+ P
Sbjct: 1147 PLLLLVGKFLVLITGILLNLTTIILLVTKRVP 1178


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   ESNVNRPDSAVFILSSSIMIYKWWHAFVRKRTKPI 111
           ESN++R    V  LS S++  +WWH  +   T  +
Sbjct: 570 ESNISRLWQEVKCLSGSVVSNEWWHQLMDDSTPSV 604


>SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)
          Length = 483

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   ESNVNRPDSAVFILSSSIMIYKWWHAFVRKRTKPI 111
           ESN++R    V  LS S++  +WWH  +   T  +
Sbjct: 94  ESNISRWWQEVKCLSGSVVSNEWWHQLMDDSTPSV 128


>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 710

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   ESNVNRPDSAVFILSSSIMIYKWWHAFVRKRTKPI 111
           ESN++R    V  LS S++  +WWH  +   T  +
Sbjct: 227 ESNISRWWQEVKCLSGSVVSNEWWHQLMDDSTPSV 261


>SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)
          Length = 594

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 115 EDKAILWKRRLSFAYALFAWNAFGLVVYSAYKGKADWAHYYGIKSDEE--KSIPPGYAWA 288
           E+K ILW+++L       A N    V+Y+  K  A+W  Y G  S+E    ++PP  A  
Sbjct: 283 EEKDILWRKQLDDLVE--ASNQRFQVLYTISKPTAEWEGYEGRISNEMLLDALPPPPAEK 340

Query: 289 N 291
           N
Sbjct: 341 N 341


>SB_16854| Best HMM Match : UL97 (HMM E-Value=4.9)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   ESNVNRPDSAVFILSSSIMIYKWWHAFVRKRTKPI 111
           ESN++R    V  LS S++  +WWH  +   T  +
Sbjct: 227 ESNISRWWQEVKCLSGSVVSNEWWHQLMDDSTPSV 261


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 85  FVRKRTKPIPEDKAILWKRRLSFAYALFA--WNAFGLVVYSAYKGKADWAHYYGIKSD-- 252
           FV K  +    D +I+  +   F   LFA  WN    VV    +G   +  YY    D  
Sbjct: 422 FVNKYQREGKCDYSIVCGKAAEFLVDLFADVWNCPDKVVILP-RGHKKYQPYYLPTLDAK 480

Query: 253 -EEKSIPPGYAW 285
            +++S+P GYAW
Sbjct: 481 VDQRSLPLGYAW 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,032,286
Number of Sequences: 59808
Number of extensions: 387750
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)