Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0556
         (706 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119061-1|AAM50921.1|  114|Drosophila melanogaster LP07417p pro...   110   2e-24
AE014298-64|AAF45524.1|  114|Drosophila melanogaster CG13365-PA ...   110   2e-24
BT004906-1|AAO49159.1|  468|Drosophila melanogaster LD15982p pro...    29   8.1  
AY113371-1|AAM29376.1| 1237|Drosophila melanogaster LP01827p pro...    29   8.1  
AE014298-2399|AAF48606.2| 1342|Drosophila melanogaster CG4301-PA...    29   8.1  
AE014297-4257|AAN14146.1|  777|Drosophila melanogaster CG9990-PB...    29   8.1  
AE014297-4256|AAF56807.1|  808|Drosophila melanogaster CG9990-PA...    29   8.1  

>AY119061-1|AAM50921.1|  114|Drosophila melanogaster LP07417p
           protein.
          Length = 114

 Score =  110 bits (265), Expect = 2e-24
 Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
 Frame = +1

Query: 70  KWWHAFVRKRTKPIPEDKAILWKRRLSFAYALFAWNAFGLVVYSAYKGKADWAHYYGIKS 249
           KW   +VR+ T PIPE +A LWKRRLS  YA+ AW AFGLV Y  Y G+ DWA YYG K+
Sbjct: 7   KWLRRWVRRNTNPIPEHRAELWKRRLSIGYAVLAWQAFGLVCYMVYTGRNDWAKYYGYKT 66

Query: 250 DEEKSIPPGYAWANTLGIK-NAKVYRISGFKKVDE 351
           +EE ++ P   +A  L ++   K+ R SGF KV+E
Sbjct: 67  EEEMALSPAQQFAKHLKVEGTGKIIRFSGFHKVEE 101


>AE014298-64|AAF45524.1|  114|Drosophila melanogaster CG13365-PA
           protein.
          Length = 114

 Score =  110 bits (265), Expect = 2e-24
 Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
 Frame = +1

Query: 70  KWWHAFVRKRTKPIPEDKAILWKRRLSFAYALFAWNAFGLVVYSAYKGKADWAHYYGIKS 249
           KW   +VR+ T PIPE +A LWKRRLS  YA+ AW AFGLV Y  Y G+ DWA YYG K+
Sbjct: 7   KWLRRWVRRNTNPIPEHRAELWKRRLSIGYAVLAWQAFGLVCYMVYTGRNDWAKYYGYKT 66

Query: 250 DEEKSIPPGYAWANTLGIK-NAKVYRISGFKKVDE 351
           +EE ++ P   +A  L ++   K+ R SGF KV+E
Sbjct: 67  EEEMALSPAQQFAKHLKVEGTGKIIRFSGFHKVEE 101


>BT004906-1|AAO49159.1|  468|Drosophila melanogaster LD15982p
           protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 480 LVIYGKVHNVDLFLHIVLFFTF*VLCICFNFIFSN 376
           LV++G  +N DLF  IVL     +  +CF F+ S+
Sbjct: 340 LVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISS 374


>AY113371-1|AAM29376.1| 1237|Drosophila melanogaster LP01827p protein.
          Length = 1237

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = -2

Query: 513  YKFIK-CKT*KKLVIYGKVHNVDLFLHIVLFFTF*VLCICFNFIFSNHL-----PVYNII 352
            + F K C   + L+++G  H+V L L ++ FF   ++ +   F+F  H       VY+ +
Sbjct: 968  FAFAKFCMLKRLLLVHGHYHSVRLSLLVLYFFYKNIVFMGIMFLFQFHTLFSSSSVYDSL 1027

Query: 351  FINLLESRYSINFSIFYTKSISP 283
            F+ L    Y+    +F   S  P
Sbjct: 1028 FLTLYNVIYTSLPILFIAISEKP 1050


>AE014298-2399|AAF48606.2| 1342|Drosophila melanogaster CG4301-PA
            protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = -2

Query: 513  YKFIK-CKT*KKLVIYGKVHNVDLFLHIVLFFTF*VLCICFNFIFSNHL-----PVYNII 352
            + F K C   + L+++G  H+V L L ++ FF   ++ +   F+F  H       VY+ +
Sbjct: 1073 FAFAKFCMLKRLLLVHGHYHSVRLSLLVLYFFYKNIVFMGIMFLFQFHTLFSSSSVYDSL 1132

Query: 351  FINLLESRYSINFSIFYTKSISP 283
            F+ L    Y+    +F   S  P
Sbjct: 1133 FLTLYNVIYTSLPILFIAISEKP 1155


>AE014297-4257|AAN14146.1|  777|Drosophila melanogaster CG9990-PB,
           isoform B protein.
          Length = 777

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 480 LVIYGKVHNVDLFLHIVLFFTF*VLCICFNFIFSN 376
           LV++G  +N DLF  IVL     +  +CF F+ S+
Sbjct: 649 LVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISS 683


>AE014297-4256|AAF56807.1|  808|Drosophila melanogaster CG9990-PA,
           isoform A protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 480 LVIYGKVHNVDLFLHIVLFFTF*VLCICFNFIFSN 376
           LV++G  +N DLF  IVL     +  +CF F+ S+
Sbjct: 680 LVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISS 714


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,778,753
Number of Sequences: 53049
Number of extensions: 574421
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)