Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0556
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine re...    29   4.3  
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   7.5  

>Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.10 protein.
          Length = 673

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = -2

Query: 384 FSNHLPVYNIIFINLLESRYSINFSIFYTKSISPGITWRYGF-FFVTFNSIVVSPISLSF 208
           + ++LP+++IIFIN L    S +F       + P +T   GF   ++ N++++S   L++
Sbjct: 248 YVSYLPLFSIIFINALPYTLSTDF-------VRPFVTLVTGFLMMISENNMLLSNKGLAY 300

Query: 207 ISTINY 190
           I  I+Y
Sbjct: 301 IGNISY 306


>Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.5 protein.
          Length = 673

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = -2

Query: 384 FSNHLPVYNIIFINLLESRYSINFSIFYTKSISPGITWRYGF-FFVTFNSIVVSPISLSF 208
           + ++LP+++IIFIN L    S +F       + P +T   GF   ++ N++++S   L++
Sbjct: 248 YVSYLPLFSIIFINALPYTLSTDF-------VRPFVTLVTGFLMMISENNMLLSNKGLAY 300

Query: 207 ISTINY 190
           I  I+Y
Sbjct: 301 IGNISY 306


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = -2

Query: 399 CFNFIFS-NHLPVYNIIFINLLESRYSIN--FSIF 304
           C NF+   + + +Y ++F+N+L S +SIN  +S+F
Sbjct: 50  CMNFLTHLDMITMYFVLFLNILHSNWSINILYSVF 84


>AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine
           receptor, class v protein22 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -2

Query: 402 ICFNFIFSNHLPVYNIIFINLLES-RYSINF-SIFYTKSISPGIT--WRYGFFFVTFNSI 235
           + F F+F    PVY +I I +L + R S+ F + FY   I   I   +   F+F   +S 
Sbjct: 27  LVFYFLFVTVTPVYILILICILRARRSSVTFKTTFYVILIQHSIADIFALSFYFFQASSQ 86

Query: 234 VVSP 223
           ++ P
Sbjct: 87  IIMP 90


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
           protein F48E3.3 protein.
          Length = 1493

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 196 YSAYKGKADWAHYYGIKSDEEKSIPPGYAWANTLGIKNAKVYRISGFKKVDEYDIVDGEM 375
           + A    A ++  +G+ SD +K    G+ +    G+ +A    ++GF       I+D E 
Sbjct: 554 FEAKFSDASFSDVFGVNSDYDKGRKHGFEFVQKTGLNSAPKVLLNGF-------ILDDEG 606

Query: 376 VTKDKVE 396
           V  D +E
Sbjct: 607 VRGDNIE 613


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 701 IYTIFETKEVLTIGL 657
           +YT+F +KE+LTIGL
Sbjct: 147 VYTVFVSKEILTIGL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,666
Number of Sequences: 27780
Number of extensions: 321483
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)