Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0556
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31050.1 68417.m04409 lipoyltransferase (LIP2p) identical to ...    29   3.0  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    28   5.2  
At4g20800.1 68417.m03019 FAD-binding domain-containing protein s...    27   9.2  

>At4g31050.1 68417.m04409 lipoyltransferase (LIP2p) identical to
           lipoyltransferase (LIP2p) [Arabidopsis thaliana]
           GI:15887052; supporting cDNA gi|15887051|dbj|AB072390.1|
          Length = 278

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 223 WAHYYGIKSDEEKSIPPGYAWANTLGIKNAKVYRISGFKKVDEYDIVD 366
           W  Y+G+  +    + P + W    GI++ KV  I G  +  E+ +VD
Sbjct: 197 WITYHGLALNVTTDLTP-FNWIVPCGIRDRKVGNIKGLLEDGEHGMVD 243


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 655 SSKNLVESELSLIFHNIRTASSASEKENLIKQFKK 551
           ++K  + SEL++  HN+ TA  A+E+E+ + + KK
Sbjct: 312 TAKEKIISELNMEIHNVETA-LANERESHVAEIKK 345


>At4g20800.1 68417.m03019 FAD-binding domain-containing protein
           similar to SP|P93479 Reticuline oxidase precursor (EC
           1.5.3.9) (Berberine-bridge-forming enzyme) {Papaver
           somniferum}; contains Pfam profile PF01565: FAD binding
           domain
          Length = 528

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 103 KPIP-EDKAILWKRRLSFAYALFAWNAFGLVV 195
           KPIP E+   +WK  L F      WN +G V+
Sbjct: 378 KPIPKEEMEKIWKAMLKFNNMWMQWNPYGGVM 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,375
Number of Sequences: 28952
Number of extensions: 293303
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)