Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0555
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 6.5
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 28 6.5
U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL032623-18|CAN99758.1| 330|Caenorhabditis elegans Hypothetical... 28 6.5
Z68300-2|CAA92616.2| 440|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine rece... 27 8.6
U01918-1|AAA85278.1| 359|Caenorhabditis elegans dpy-20 protein. 27 8.6
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 169 EILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIK 348
+IL K LVPY+ C+L+ D K M++ C + T + S +I+ K
Sbjct: 464 QILTAAKQLVPYVSCILNMNAMI-DPKRCHPPDPAPMESICLEITGIEPNSQNRILAIEK 522
Query: 349 QHE 357
+ E
Sbjct: 523 EEE 525
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 253 LKAHIKDGMQTACAKCTDKQ 312
L +KD +QT C+KC D Q
Sbjct: 1727 LSGSLKDAVQTLCSKCNDVQ 1746
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 199 PYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQ 351
P+ ++ GR T D ++ H TAC KC +K +S ++++H +
Sbjct: 569 PFAIHMVCAGRYTEDQRQAAKH----HPTACLKCQEKHILSNEEMIEHANE 615
>U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical
protein R04E5.2 protein.
Length = 762
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 133 KYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHI 267
K DKY +D+D + NR +V +K ++ C D LK I
Sbjct: 288 KILDKYAGVDIDVV--NRSRMVEMLKMNMENDACDIDLSTLKIAI 330
>AL032623-18|CAN99758.1| 330|Caenorhabditis elegans Hypothetical
protein Y43F8B.15 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
Frame = +1
Query: 298 CTDKQKVSARKIVK---HI-----KQHEADYWEQM----KAKYDPKDE-FKEIYE 423
CTD QKV +++ H KQH DYW+++ + P DE FK +Y+
Sbjct: 95 CTDSQKVLCNEVIITTFHALFDLKKQHPHDYWKRIILYHTNDFTPTDEQFKRLYK 149
>Z68300-2|CAA92616.2| 440|Caenorhabditis elegans Hypothetical
protein T22B3.1 protein.
Length = 440
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 163 VDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK-QKVSARKIVK 339
VD + +L+P +K GR T + H D C CT + A + K
Sbjct: 118 VDCSISPEPILMPSVK----RGRPTENPCWAYFHRIDDQLVKCRLCTKVVRSACATNMTK 173
Query: 340 HIKQHEADYWEQM 378
H+++H AD ++++
Sbjct: 174 HLERHHADDYQKV 186
>U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine
receptor, class sx protein22 protein.
Length = 306
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 353 CCLMCLTIFLADTFCLSVHFAHAVCIPS 270
CC++ L + LA F LS VC P+
Sbjct: 129 CCILSLVVSLAKLFYLSEDIVLTVCYPT 156
>U01918-1|AAA85278.1| 359|Caenorhabditis elegans dpy-20 protein.
Length = 359
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 163 VDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK-QKVSARKIVK 339
VD + +L+P +K GR T + H D C CT + A + K
Sbjct: 118 VDCSISPEPILMPSVK----RGRPTENPCWAYFHRIDDQLVKCRLCTKVVRSACATNMTK 173
Query: 340 HIKQHEADYWEQM 378
H+++H AD ++++
Sbjct: 174 HLERHHADDYQKV 186
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 235 TPDGKELKAHIKDG--MQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKY 390
TP K L+ K G Q K +K +A+K+V + + +YW+ + ++
Sbjct: 684 TPGEKSLEIQEKSGEKSQKPAKKGQKSEKKAAKKVVVEERNYWVEYWQPREKRW 737
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,471
Number of Sequences: 27780
Number of extensions: 281339
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -