Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0554
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0373 - 13194723-13195847,13196219-13196809 31 0.89
11_06_0254 - 21721667-21721718,21722025-21722647 30 1.5
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 2.7
04_04_1129 - 31107892-31110246 29 2.7
03_06_0715 + 35693002-35694585 29 2.7
02_04_0311 + 21936812-21937861 29 2.7
04_04_0057 + 22410167-22411330 29 3.6
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 4.7
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 4.7
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 28 6.2
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 28 6.2
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 28 6.2
10_08_1048 - 22553676-22554866 28 8.3
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 28 8.3
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 28 8.3
01_06_0751 + 31690411-31690443,31692900-31694240 28 8.3
01_03_0163 + 13346586-13347809 28 8.3
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 379 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 284
V+E G + QL+R WR + RG++D D R R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 500 DPQPPAAVLAS-SPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSYAQQ 676
DP PA S +V P +E VYG T P + PG + + +AQ+
Sbjct: 47 DPSSPAIHFGDGSGYVDPDPGHSFQAIYEQVYGDAYTWGTTSPATKPGVPSPPMSGFAQE 106
Query: 677 AQ 682
A+
Sbjct: 107 AE 108
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 500 DPQPPAAVLAS--SPFVTSQPTEELLREFETVYGAVELTHL 616
DP PA V S SP + QP EL+RE T+ +E+ HL
Sbjct: 78 DPDHPAPVNLSLESPMLKVQPANELIREVATL--ELEIKHL 116
>04_04_1129 - 31107892-31110246
Length = 784
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 458 PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEEL-LREFETV--YGAVELTHLTPPQ 628
PS+ +S +P + P P +LA+S S PT L L + V + L PP+
Sbjct: 103 PSLSAALSALPSQ--PDPALLLLAASSLPASDPTPLLALVAWARVQPWFVPSDDTLLPPR 160
Query: 629 SPPGPATQLL 658
PP P QLL
Sbjct: 161 RPPRPGHQLL 170
>03_06_0715 + 35693002-35694585
Length = 527
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 539 FVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSYAQQAQ 682
+V P + +E VYG + P +PPG + + +AQQA+
Sbjct: 66 YVDPDPGHSMQAIYEQVYGTPFVDARATPITPPGVPSPPMAGFAQQAE 113
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 434 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEE 565
WLE V P N+ + P P PPA +SSP + EE
Sbjct: 154 WLEGHVTCPLCRANLEKQPA---PSPPAVEFSSSPAAAAAAAEE 194
>04_04_0057 + 22410167-22411330
Length = 387
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 434 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSP 538
WLE +V P N+ + P P P AA + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 437 LEEKVDLPSIFENISEVPERVDPQPPAA-VLASSPFVTSQPTEELLREFETVYGAVELTH 613
L E + L +IF N SE+ + P P V AS+ FV++ + ++ V A H
Sbjct: 2441 LAEVLHLQTIFRNPSELKSYLLPNPDRCNVPASTMFVSN---DSIVVVDVNVPAAHVALH 2497
Query: 614 LTPPQSPPGPATQLLLSYAQQA 679
P +P G T L + + A
Sbjct: 2498 HWQPNTPDGQGTPFLFHHGRNA 2519
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 494 RVDPQPPAAVLASSPFVTSQPT-EELLREFETVYGAVELTHLTPPQSPPGPATQ 652
+V P PP+A + S P + P + ET++ + + PQ+PP P Q
Sbjct: 302 QVPPVPPSAPVPSVPALPRDPYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQ 355
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +2
Query: 479 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLL 658
+E P + P PP + AS S P + LLR+ V PP PP PA LL
Sbjct: 4 AEDPAKPPPPPPPQLEASG----SDPDDPLLRDRVVVIAPPPPP--PPPPPPPAPAPALL 57
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 511 PGSGSSFKSFCDLAAH*RTAAGIRNGLWCCR 603
P GS S C + TA G+ GLWCCR
Sbjct: 397 PSCGSYTASACPIYVESGTA-GVVIGLWCCR 426
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 383 LLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVD 502
L+ +L C ++N+ +LE+++ P +FE + +R+D
Sbjct: 754 LVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRID 793
>10_08_1048 - 22553676-22554866
Length = 396
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 494 RVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV-ELTHLTPPQSPPGPATQLLLSYA 670
R PP +L + E+LLR+ + V +L HL PP P LL Y+
Sbjct: 45 RASTAPP--LLLPAAHQAQAQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYS 102
Query: 671 QQA 679
+ A
Sbjct: 103 RLA 105
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +2
Query: 443 EKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETV-YGAVELTHLT 619
E+++ P + PE + P PP A +P T PT V A L T
Sbjct: 108 EEIEDPDGDSPFVDAPEHISPPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWAAPLPART 167
Query: 620 PPQSPPGP 643
P +P P
Sbjct: 168 PTPTPSAP 175
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +2
Query: 497 VDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV--ELTH----LTPPQSPPGPATQLL 658
VD PAA+L + F TS EELL +Y ++ L H ++ QS A+ ++
Sbjct: 292 VDAYQPAALLFCTSFETSYGVEELLNTLPRLYDSLLPSLLHGFQVMSSSQSNGETASDII 351
Query: 659 LS 664
LS
Sbjct: 352 LS 353
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 476 ISEVPERVD-PQPPAAVLASSPFVTSQPT 559
I E+P+R + P PPAA P T Q T
Sbjct: 195 IDELPDRAEAPPPPAAASTEQPEATEQAT 223
>01_03_0163 + 13346586-13347809
Length = 407
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 182 SWAAAIDLLTNDECRLLLEVED 247
SW AA+D +T DE R LLE D
Sbjct: 115 SWDAALDGITADEARALLESID 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,425,438
Number of Sequences: 37544
Number of extensions: 371708
Number of successful extensions: 1307
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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