Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0554
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021728-3|CAA16820.1| 1042|Drosophila melanogaster EG:95B7.8,FB...    31   1.1  
AF141673-1|AAD32687.1| 1042|Drosophila melanogaster fs(1)YB prot...    31   1.1  
AE014298-454|AAF45815.1| 1042|Drosophila melanogaster CG2706-PA ...    31   1.1  
BT011042-1|AAR31113.1|  856|Drosophila melanogaster SD02665p pro...    31   1.5  
AF353512-1|AAK58866.1|  856|Drosophila melanogaster regular prot...    31   1.5  
AE013599-673|AAF59069.2|  856|Drosophila melanogaster CG8643-PA ...    31   1.5  
BT025842-1|ABF85742.1|  818|Drosophila melanogaster IP12350p pro...    30   3.5  
BT024328-1|ABC86390.1|  593|Drosophila melanogaster IP10742p pro...    30   3.5  
BT023033-1|AAY55449.1|  186|Drosophila melanogaster IP04035p pro...    30   3.5  
BT022956-1|AAY55372.1|  148|Drosophila melanogaster IP04235p pro...    30   3.5  
AE013599-2059|AAF58136.1|  165|Drosophila melanogaster CG12959-P...    30   3.5  
AY061331-1|AAL28879.1|  403|Drosophila melanogaster LD25702p pro...    29   4.6  
AE014296-1025|AAF50735.1|  525|Drosophila melanogaster CG10489-P...    29   4.6  
AB102715-1|BAD10843.1|  403|Drosophila melanogaster DNA polymera...    29   4.6  
AY069653-1|AAL39798.1|  713|Drosophila melanogaster LD42374p pro...    29   8.1  
AE013599-1154|AAF58768.1|  713|Drosophila melanogaster CG11883-P...    29   8.1  
AE013599-1153|AAF58767.1|  732|Drosophila melanogaster CG11883-P...    29   8.1  

>AL021728-3|CAA16820.1| 1042|Drosophila melanogaster
           EG:95B7.8,FBgn0000928;fs(1)Yb protein.
          Length = 1042

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 410 KQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLAS----SPFVTSQPTEELLRE 577
           K++ I  +  +  V L + FE  S     VD   PAA   +    SPFVT  PT+ L  E
Sbjct: 220 KEQEINLSVEDATVKLLASFELGSTDSAAVDESSPAAAKFNAPVYSPFVTENPTKSLDAE 279

Query: 578 FETVYGAVELTHLTPPQS-PPGPATQL 655
           F+ +  + ++ ++    + PP P+  +
Sbjct: 280 FQELVKSFKVQNVFKNMNLPPPPSVSI 306


>AF141673-1|AAD32687.1| 1042|Drosophila melanogaster fs(1)YB
           protein.
          Length = 1042

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 410 KQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLAS----SPFVTSQPTEELLRE 577
           K++ I  +  +  V L + FE  S     VD   PAA   +    SPFVT  PT+ L  E
Sbjct: 220 KEQEINLSVEDATVKLLASFELGSTDSAAVDESSPAAAKFNAPVYSPFVTENPTKSLDAE 279

Query: 578 FETVYGAVELTHLTPPQS-PPGPATQL 655
           F+ +  + ++ ++    + PP P+  +
Sbjct: 280 FQELVKSFKVQNVFKNMNLPPPPSVSI 306


>AE014298-454|AAF45815.1| 1042|Drosophila melanogaster CG2706-PA
           protein.
          Length = 1042

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 410 KQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLAS----SPFVTSQPTEELLRE 577
           K++ I  +  +  V L + FE  S     VD   PAA   +    SPFVT  PT+ L  E
Sbjct: 220 KEQEINLSVEDATVKLLASFELGSTDSAAVDESSPAAAKFNAPVYSPFVTENPTKSLDAE 279

Query: 578 FETVYGAVELTHLTPPQS-PPGPATQL 655
           F+ +  + ++ ++    + PP P+  +
Sbjct: 280 FQELVKSFKVQNVFKNMNLPPPPSVSI 306


>BT011042-1|AAR31113.1|  856|Drosophila melanogaster SD02665p
           protein.
          Length = 856

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 446 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 625
           ++DL  + EN    P    P PP+A ++      S P    L  F  ++  V +T  TP 
Sbjct: 134 EIDLVYVVEN----PLPPSP-PPSADISVDELPGSSPQSFDLDPFAVLHEVVTMTPPTPI 188

Query: 626 QSPPGPAT 649
             PPGP T
Sbjct: 189 APPPGPPT 196


>AF353512-1|AAK58866.1|  856|Drosophila melanogaster regular
           protein.
          Length = 856

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 446 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 625
           ++DL  + EN    P    P PP+A ++      S P    L  F  ++  V +T  TP 
Sbjct: 134 EIDLVYVVEN----PLPPSP-PPSADISVDELPGSSPQSFDLDPFAVLHEVVTMTPPTPI 188

Query: 626 QSPPGPAT 649
             PPGP T
Sbjct: 189 APPPGPPT 196


>AE013599-673|AAF59069.2|  856|Drosophila melanogaster CG8643-PA
           protein.
          Length = 856

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 446 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 625
           ++DL  + EN    P    P PP+A ++      S P    L  F  ++  V +T  TP 
Sbjct: 134 EIDLVYVVEN----PLPPSP-PPSADISVDELPGSSPQSFDLDPFAVLHEVVTMTPPTPI 188

Query: 626 QSPPGPAT 649
             PPGP T
Sbjct: 189 APPPGPPT 196


>BT025842-1|ABF85742.1|  818|Drosophila melanogaster IP12350p
           protein.
          Length = 818

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 48  QNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAV 227
           +NGA +    P   N + + H   +T+ +I       Q +R     GLR  IC L     
Sbjct: 689 RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGD 748

Query: 228 CCSKL 242
           C   L
Sbjct: 749 CAPNL 753


>BT024328-1|ABC86390.1|  593|Drosophila melanogaster IP10742p
           protein.
          Length = 593

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 48  QNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAV 227
           +NGA +    P   N + + H   +T+ +I       Q +R     GLR  IC L     
Sbjct: 464 RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGD 523

Query: 228 CCSKL 242
           C   L
Sbjct: 524 CAPNL 528


>BT023033-1|AAY55449.1|  186|Drosophila melanogaster IP04035p
           protein.
          Length = 186

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 48  QNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAV 227
           +NGA +    P   N + + H   +T+ +I       Q +R     GLR  IC L     
Sbjct: 57  RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGD 116

Query: 228 CCSKL 242
           C   L
Sbjct: 117 CAPNL 121


>BT022956-1|AAY55372.1|  148|Drosophila melanogaster IP04235p
           protein.
          Length = 148

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 48  QNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAV 227
           +NGA +    P   N + + H   +T+ +I       Q +R     GLR  IC L     
Sbjct: 26  RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGD 85

Query: 228 CCSKL 242
           C   L
Sbjct: 86  CAPNL 90


>AE013599-2059|AAF58136.1|  165|Drosophila melanogaster CG12959-PA
           protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 48  QNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAV 227
           +NGA +    P   N + + H   +T+ +I       Q +R     GLR  IC L     
Sbjct: 43  RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGD 102

Query: 228 CCSKL 242
           C   L
Sbjct: 103 CAPNL 107


>AY061331-1|AAL28879.1|  403|Drosophila melanogaster LD25702p
           protein.
          Length = 403

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 446 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV 601
           ++DLP + E + ++    D  PP A++   PF  S      LR      G +
Sbjct: 171 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGL 222


>AE014296-1025|AAF50735.1|  525|Drosophila melanogaster CG10489-PA
           protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 446 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV 601
           ++DLP + E + ++    D  PP A++   PF  S      LR      G +
Sbjct: 293 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGL 344


>AB102715-1|BAD10843.1|  403|Drosophila melanogaster DNA polymerase
           epsilon secondsubunit protein.
          Length = 403

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 446 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV 601
           ++DLP + E + ++    D  PP A++   PF  S      LR      G +
Sbjct: 171 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGL 222


>AY069653-1|AAL39798.1|  713|Drosophila melanogaster LD42374p
           protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 546 VTKGLEARTAAGGCGSTRSGTSEMFSKIEGRSTFSSNQLEK 424
           V++    R    GCGS  SG+  +   + GRST  S+QLEK
Sbjct: 83  VSQPQSPRHRGSGCGSV-SGSRIITHGLTGRSTSISSQLEK 122


>AE013599-1154|AAF58768.1|  713|Drosophila melanogaster CG11883-PB,
           isoform B protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 546 VTKGLEARTAAGGCGSTRSGTSEMFSKIEGRSTFSSNQLEK 424
           V++    R    GCGS  SG+  +   + GRST  S+QLEK
Sbjct: 83  VSQPQSPRHRGSGCGSV-SGSRIITHGLTGRSTSISSQLEK 122


>AE013599-1153|AAF58767.1|  732|Drosophila melanogaster CG11883-PA,
           isoform A protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 546 VTKGLEARTAAGGCGSTRSGTSEMFSKIEGRSTFSSNQLEK 424
           V++    R    GCGS  SG+  +   + GRST  S+QLEK
Sbjct: 83  VSQPQSPRHRGSGCGSV-SGSRIITHGLTGRSTSISSQLEK 122


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,762,087
Number of Sequences: 53049
Number of extensions: 636268
Number of successful extensions: 2195
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)