Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0554
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.92 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 6   GTSVCLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLW---TFIRIRGTKSLQQ 161
           G+  C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 181 GSCKCIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 295 CSARKVFKQITIIIEEILNFEQQTALIVSEQID 197
           CS   V   IT + + +  F ++ AL +SE ++
Sbjct: 135 CSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 628 ESAGTRDSVASELRSTSTMHS 690
           E   T++   SE+ STS++HS
Sbjct: 183 ERQRTKERDQSEVESTSSLHS 203


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 628 ESAGTRDSVASELRSTSTMHS 690
           E   T++   SE+ STS++HS
Sbjct: 183 ERQRTKERDQSEVESTSSLHS 203


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 SASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKN 280
           S SQ+++ AA ++    DE RLL  V     D CD  ++
Sbjct: 161 SRSQEKAVAAELE----DEQRLLATVVQAHLDTCDFTRD 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,981
Number of Sequences: 438
Number of extensions: 3425
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)