Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0554
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77460.1 68414.m09020 C2 domain-containing protein / armadill...    33   0.18 
At1g10620.1 68414.m01204 protein kinase family protein contains ...    33   0.24 
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p...    29   2.3  
At4g35870.1 68417.m05094 expressed protein                             29   3.0  
At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    29   3.9  
At4g35790.3 68417.m05086 phospholipase D delta / PLD delta (PLDD...    28   6.9  
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD...    28   6.9  
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD...    28   6.9  
At3g30670.1 68416.m03887 hypothetical protein                          27   9.1  
At1g40125.1 68414.m04763 hypothetical protein member of hypothet...    27   9.1  

>At1g77460.1 68414.m09020 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2110

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 416  ENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTS 550
            E I ++W +  +D   IFE +S+V  + DPQPP  +  S+ FV S
Sbjct: 1596 EKISASWPKAVLDAEGIFE-LSKVILQEDPQPPLDLWESAAFVLS 1639


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 533 SPFVTSQPTEELLREFETVYGAVELTH--LTPPQSPPGPATQLLLSYAQQAQ 682
           SPFV SQPT       + + G  E T    T P SPP P TQ     A  AQ
Sbjct: 16  SPFVASQPTNVGGFTDQKIIGGSETTQPPATSPPSPPSPDTQTSPPPATAAQ 67


>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 315

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 479 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGP 643
           S+ P+ V  +P +    SSP    Q   E  +E +      +LT LTPP  PP P
Sbjct: 188 SKKPQLVTKEPISPKPLSSPRKQQQLQTET-KEAKASVSQTKLTTLTPPGPPPPP 241


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +2

Query: 377 NDLLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQP 556
           ND+LQ +  Q ++  + +      ++ P + EN+ E P   D +P +  L+  P   + P
Sbjct: 599 NDMLQLVPEQNEEYALENQEPSSNLETPLLPENMFESPRFGDIEPMSQDLSEYPISRTSP 658

Query: 557 TEELLREFETVYGAVELT 610
             +   +F   Y A  LT
Sbjct: 659 IPKQKFDFAQYY-AFNLT 675


>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +3

Query: 9   TSVCLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRV-RRSH 185
           T VC+     N   N     Q SP + NT+I  H S  + +R R  K +     V +   
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR--KRIGHLFHVIKLKS 167

Query: 186 GLRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRRSKS 311
           G   S C +  S V  +K+R    M+       R   R+SKS
Sbjct: 168 GSSTSSCHVAPSKVEGTKVRKQGWMV---RTLTRKKSRKSKS 206


>At4g35790.3 68417.m05086 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 693

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 650 ESRVPADSAAVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQELQKCF 471
           E++VP D    L  L +   +   +   +L W  ++  D      PGV+G   +E +K F
Sbjct: 271 ETKVPRDKDMTLGELLKYKSQE-GVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFF 329

Query: 470 RRS 462
           + S
Sbjct: 330 KHS 332


>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 857

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 650 ESRVPADSAAVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQELQKCF 471
           E++VP D    L  L +   +   +   +L W  ++  D      PGV+G   +E +K F
Sbjct: 271 ETKVPRDKDMTLGELLKYKSQE-GVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFF 329

Query: 470 RRS 462
           + S
Sbjct: 330 KHS 332


>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 868

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 650 ESRVPADSAAVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQELQKCF 471
           E++VP D    L  L +   +   +   +L W  ++  D      PGV+G   +E +K F
Sbjct: 271 ETKVPRDKDMTLGELLKYKSQE-GVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFF 329

Query: 470 RRS 462
           + S
Sbjct: 330 KHS 332


>At3g30670.1 68416.m03887 hypothetical protein
          Length = 133

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 464 IFENISEVPERVDPQPPAAVLASSPFVTSQP 556
           +F++ +  P+RVDP PP       P ++  P
Sbjct: 79  LFQHSTNQPQRVDPLPPQETAQQDPPLSPDP 109


>At1g40125.1 68414.m04763 hypothetical protein member of
           hypothetical protein common family
          Length = 168

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 464 IFENISEVPERVDPQPPAAVLASSPFVTSQP 556
           +F++ +  P+RVDP PP       P ++  P
Sbjct: 78  LFQHSTNQPQRVDPLPPQETAQQDPPLSPDP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,758
Number of Sequences: 28952
Number of extensions: 284129
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)