Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0553
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY596807-1|AAT42127.1|  634|Homo sapiens sodium-dependent amino ...    33   1.2  
AY591756-1|AAT66171.1|  634|Homo sapiens system B0 neutral amino...    33   1.2  
AB209296-1|BAD92533.1|  383|Homo sapiens syntaxin 16 isoform a v...    31   3.5  
BC068507-1|AAH68507.1|  778|Homo sapiens chromosome 11 open read...    31   4.7  
AK027207-1|BAB15691.1|  724|Homo sapiens protein ( Homo sapiens ...    31   4.7  

>AY596807-1|AAT42127.1|  634|Homo sapiens sodium-dependent amino
           acid transporter protein.
          Length = 634

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -3

Query: 197 LSVLKNFINIYVVILVSVLLGNR*ARHE*KCSNC*TLHVCNGFNQHKSDVTQ 42
           +S++  F ++YV I+V  ++G R  +    C +   L + NGF+  + +VTQ
Sbjct: 306 VSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQ 357


>AY591756-1|AAT66171.1|  634|Homo sapiens system B0 neutral amino
           acid transporter protein.
          Length = 634

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -3

Query: 197 LSVLKNFINIYVVILVSVLLGNR*ARHE*KCSNC*TLHVCNGFNQHKSDVTQ 42
           +S++  F ++YV I+V  ++G R  +    C +   L + NGF+  + +VTQ
Sbjct: 306 VSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQ 357


>AB209296-1|BAD92533.1|  383|Homo sapiens syntaxin 16 isoform a
           variant protein.
          Length = 383

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +1

Query: 247 PMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKS 426
           P+GR+   +S  ECR  V +V  NR+ + ERS  TL+ +   TG         K N+KKS
Sbjct: 323 PLGRSSSCLSPLECRVPVCNVFANRK-KSERSSYTLACSVPGTGG--------KKNNKKS 373

Query: 427 TR 432
            R
Sbjct: 374 KR 375


>BC068507-1|AAH68507.1|  778|Homo sapiens chromosome 11 open reading
           frame 63 protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +1

Query: 229 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 408
           TK++ +P G+   +++  +  +R   ++I ++C+ +  L + S+T+ +T S+   N  P+
Sbjct: 338 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 396

Query: 409 -MNSKKSTRDSSLVKTKLVI 465
              ++    D+S     +VI
Sbjct: 397 QQQNQNKPLDTSTKPESIVI 416


>AK027207-1|BAB15691.1|  724|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23554 fis, clone LNG09359. ).
          Length = 724

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +1

Query: 229 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 408
           TK++ +P G+   +++  +  +R   ++I ++C+ +  L + S+T+ +T S+   N  P+
Sbjct: 284 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 342

Query: 409 -MNSKKSTRDSSLVKTKLVI 465
              ++    D+S     +VI
Sbjct: 343 QQQNQNKPLDTSTKPESIVI 362


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,634,307
Number of Sequences: 237096
Number of extensions: 1757862
Number of successful extensions: 3170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3170
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)