Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0552
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    34   0.021
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.60 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    29   0.60 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.8  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    27   3.2  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    26   4.2  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   7.4  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   9.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.8  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -1

Query: 377 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDI 228
           L R  S +   SSSS    H + P T S +P + ST S  G +VIT+ D+
Sbjct: 48  LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDV 97


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 312 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 446
           +PV +H+ ++TS      VPG  R +D   DCP++    F   S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 447 SSENSSQMTLQRLQDSHLNLFDG 379
           S++NSS  + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 107 MLPILNPFTVTFTIHTLHFTTKTITNLFNLPKN 9
           +L + NP + +  +H    TT  I NLFN+P N
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVPSN 766


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 245 ITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 111
           +T ++  WTS T H   A      R+++  + P E IS ++G TV
Sbjct: 299 LTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 502 EVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVG 642
           E  + D     + +L  TI+DV+D ++++ +        V R  ++G
Sbjct: 464 ETVSQDTSLTSVTVLPRTIRDVFDRIRFVLNGLTDNNVEVSRHNNIG 510


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 494 KPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 348
           +P +  L L+TS T   P++      N+CR++  I  S  + PR+ S  V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 560 LIVKDRISIPILPTS 516
           LIV DR+ +PILPT+
Sbjct: 37  LIVIDRVELPILPTT 51


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +1

Query: 136 IVSGGCFGPTTKRTIVGGW--AWAWCL 210
           +++ G +G        G W  AWAWCL
Sbjct: 343 LLTSGWWGMARHINYFGDWIMAWAWCL 369


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 351 CEKFVFVHDLALGDSGHRERHSLGRFNVLAHRVQCHHFKGYTLDVRN 211
           C +   VHD +  D+ H  + +L  ++ +AHRV       Y+ D  N
Sbjct: 794 CFEKKLVHDSS-SDTSHPYKSALDLYDFMAHRVVITFEPRYSDDTNN 839


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +3

Query: 144  RWLFRADHETYHSGWMG-----MGLVSGYGRPTYIP*SDDIEPD 260
            RWLFR +     + W+G        V+GY R  Y   +D I  D
Sbjct: 1386 RWLFRENSRNQANSWIGNCQLCRTRVTGYKRKIYGKKADKIAMD 1429


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
 Frame = +3

Query: 396  DDCPANVGGSFASYSR----NSYSRRGVQRQGPIRGLGTRSGCAGRRKNGNRDSVLHD*G 563
            +D P   GG    Y+R    N     G Q   PI      +     +  G+RDSV+ + G
Sbjct: 785  NDFPPIFGGHSNVYNRQQPGNVSGMSGTQTSNPINNATANTSGMTEKAAGHRDSVIGNGG 844

Query: 564  RLRRCPVSGQLG 599
                  +S  LG
Sbjct: 845  VTGANSMSSTLG 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,413
Number of Sequences: 5004
Number of extensions: 66716
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)