Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0552
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)             302   2e-82
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   75   5e-14
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          33   0.16 
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)                     31   1.1  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   31   1.1  
SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)                     30   1.9  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_8590| Best HMM Match : STAS (HMM E-Value=0.53)                      29   4.5  
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)                  28   5.9  
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)          28   7.9  
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score =  302 bits (741), Expect = 2e-82
 Identities = 143/189 (75%), Positives = 161/189 (85%)
 Frame = +1

Query: 97  MGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCEYVE 276
           MGN +TVGPNEAL+VSGGC G   K+T++GGWA+AW  VTDVQ ISLEVMTLNP CE VE
Sbjct: 284 MGNCYTVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACVTDVQSISLEVMTLNPTCEAVE 343

Query: 277 TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTV 456
           TAQGV +TVTGVAQ K+M E  LL TACEQFLGKT ++I+  VLQTLEGHLRAILGTL+V
Sbjct: 344 TAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLGKTTRQIESVVLQTLEGHLRAILGTLSV 403

Query: 457 EEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDAD 636
           EE+YKDR+ FA LVREVA+PDVGRMGIEILSFTIKD+ D V YL SLGK+QTA VKRDAD
Sbjct: 404 EEIYKDREAFAALVREVASPDVGRMGIEILSFTIKDIEDHVDYLNSLGKTQTAKVKRDAD 463

Query: 637 VGVALANRD 663
           +GVA A RD
Sbjct: 464 IGVAEAKRD 472


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
 Frame = +1

Query: 310 VAQCKIMNED-ELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQF 486
           + Q KI  ++ E+L  AC+QFLGK+ ++ +   L+TLEGH RAI+GT+TV          
Sbjct: 63  ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTV---------- 112

Query: 487 AGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVALANRD 663
                EVA+ D+  MGI I+S+TIKD+ D+ + +A   +      K + D  +A A RD
Sbjct: 113 -----EVASSDLVNMGISIVSYTIKDIRDEEEAIA---EEARLKAKYENDTQIAKAKRD 163


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 416 WRVIC---ELFSELLQ*KRCTKTGTNSRAWYAKWLRRTSEEWESRFCPSRLRTSTTMSSI 586
           W +IC   EL+S       C    +N   W  +W    ++EW +R CP   R     + I
Sbjct: 180 WHLICMRVELYSCSEDGSPCLDRDSNCANWANQWQCLKNKEWMTRNCPKSCRACGPDTPI 239

Query: 587 WPA 595
            PA
Sbjct: 240 EPA 242


>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
          Length = 638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 374 PRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTR-HQA 198
           P N   A +RS    ++L    P   S +P++ S Y+ +   V+  RD     VT+ ++ 
Sbjct: 17  PSNNMDATIRSPGDPLVLERPPPRWSSNSPYSESYYNSLAV-VLQRRDWENPGVTQLNRL 75

Query: 197 HAHPP 183
            AHPP
Sbjct: 76  AAHPP 80


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 351  NCLRAVPGQDRQRD*DDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCAGR 521
            N + + P Q R+R       +  G   + SR SYS  G +   P R    R+  AGR
Sbjct: 1006 NSIESSPHQSRRRSARSSGTSSSGFDTASSRGSYSSEGFRTIDPARAHALRNTTAGR 1062


>SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 600 PQAGQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQARELV 478
           P   ++  ++VD  N  G+ L  HS +V+  +F+Y+ + L+
Sbjct: 221 PDQDRVNHVIVDASNSPGKILVVHSGNVKEENFSYRDKTLM 261


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 203 QAHAHPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPF 84
           QA   PPTM++ +  P  PP  I     P+V + P  NPF
Sbjct: 402 QASIPPPTMIQTLPPPSVPPPPIGVPNRPSV-LYPNNNPF 440


>SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)
          Length = 400

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 600 PQAGQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQAREL 481
           P   ++  ++VD  N  G+ L  HS +V+  +F+Y+ + L
Sbjct: 197 PDQDRVNHVIVDASNSPGKILVVHSGNVKEENFSYRDKTL 236


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
 Frame = -1

Query: 635  SASLFTLAVCDFPKLARYWTSS*TSLIVKDRISI--PILPTSGAATSRTKPANWSLSLYT 462
            S+S+ T +    P L    T++ T+  + + ++I  P+LPT+   TS    +  S S+ T
Sbjct: 841  SSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTT---TSVLTSSMESSSMAT 897

Query: 461  SSTVRVPRIARK*PSN----VCRTVILISLTVLPRNCSQAVVRSSSSFM 327
            +ST   P +     +N         + IS  VLP   S       SS M
Sbjct: 898  TSTSSTPSLESSMTTNSTTSTLAEAVAISSLVLPTTTSVLTSSMESSSM 946


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 76   LSRYTHCTSQLKR*QTCLIYRKINK 2
            L   T C S+++R Q+C++ +KINK
Sbjct: 1401 LKNITVCDSEVERQQSCMVSQKINK 1425


>SB_8590| Best HMM Match : STAS (HMM E-Value=0.53)
          Length = 158

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 436 ILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLG 600
           ILG +   E+Y+D  QF GL +E    +V    +     +I+D+ D   +   +G
Sbjct: 73  ILGQVPGTEIYRDIRQFPGLAKEFQRINV-NFYLASCRHSIRDMLDKAHFTRDVG 126


>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
          Length = 764

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 312 DSGHRERHSLGRFNVLAHRVQCHHFKGYTLDVRNQTP 202
           DSGH  R +L   NV  + +   H +  TLD R+  P
Sbjct: 342 DSGHVRRKTLDSRNVRRNTLDSRHVRRNTLDSRHVRP 378


>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
          Length = 407

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +1

Query: 118 GPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPM--CEYVETAQGV 291
           GPNE L+ +GGC    T   ++GG++   CL      +SL+  T   +  C Y     G 
Sbjct: 325 GPNECLVNNGGC--SHTCLNLIGGYS---CLCPPGFELSLDKRTCTDINECGYNRGGCGQ 379

Query: 292 PLTVT-GVAQCKIMN 333
             T + G   C  +N
Sbjct: 380 ICTNSLGSYNCSCLN 394


>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 348 EKFVFVHDLALGDSGHRERHSLGRFNVL--AHRVQCH 244
           EK V    L L D GHR +HSL   N L   H    H
Sbjct: 52  EKCVSALKLNLRDQGHRNKHSLSPPNALMATHNASSH 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,543,469
Number of Sequences: 59808
Number of extensions: 550686
Number of successful extensions: 1739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)