Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0552
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 35 0.045
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 35 0.045
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 32 0.42
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 32 0.42
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 32 0.42
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 31 0.56
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 31 0.56
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 31 0.56
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 31 0.56
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.56
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.56
U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 3.9
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 29 3.9
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 29 3.9
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 3.9
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 3.9
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 29 3.9
Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 28 5.2
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 28 5.2
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.045
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 427 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 606
LR +LGT T+ E+ +RD A + +V G+++ IKD+ Q + S+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAK 290
Query: 607 QTANVKRDADVGVALANRD 663
A + A + A +D
Sbjct: 291 AEAVRRARAAIIAAQGEKD 309
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 35.1 bits (77), Expect = 0.045
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 427 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 606
LR +LGT T+ E+ +RD A + +V G+++ IKD+ Q + S+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAK 290
Query: 607 QTANVKRDADVGVALANRD 663
A + A + A +D
Sbjct: 291 AEAVRRARAAIIAAQGEKD 309
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 31.9 bits (69), Expect = 0.42
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 512 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 336
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 335 SFMILHWATPVTVSGTPWAVS 273
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 31.9 bits (69), Expect = 0.42
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 512 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 336
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 468 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 527
Query: 335 SFMILHWATPVTVSGTPWAVS 273
S + H ATP T +G P A +
Sbjct: 528 SNIQNHRATPST-AGAPMAAT 547
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 31.9 bits (69), Expect = 0.42
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 512 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVIL-ISLTVLPRNCSQAVVRSSS 336
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 335 SFMILHWATPVTVSGTPWAVS 273
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 31.5 bits (68), Expect = 0.56
Identities = 45/209 (21%), Positives = 85/209 (40%)
Frame = +1
Query: 22 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 201
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 49 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 97
Query: 202 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 381
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 98 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 154
Query: 382 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 561
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 155 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 207
Query: 562 DVYDDVQYLASLGKSQTANVKRDADVGVA 648
DV VQ ++ A + A V VA
Sbjct: 208 DVRLPVQLQRAMAAEAEAAREARAKVIVA 236
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 31.5 bits (68), Expect = 0.56
Identities = 45/209 (21%), Positives = 85/209 (40%)
Frame = +1
Query: 22 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 201
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 202 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 381
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 382 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 561
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 562 DVYDDVQYLASLGKSQTANVKRDADVGVA 648
DV VQ ++ A + A V VA
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVA 311
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 31.5 bits (68), Expect = 0.56
Identities = 45/209 (21%), Positives = 85/209 (40%)
Frame = +1
Query: 22 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 201
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 202 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 381
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 382 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 561
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 562 DVYDDVQYLASLGKSQTANVKRDADVGVA 648
DV VQ ++ A + A V VA
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVA 311
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 427 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKS 606
LR +LGT ++ E+ DR+ A ++ + GI++ IKDV +Q ++
Sbjct: 190 LRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPIQLQRAMAAE 249
Query: 607 QTANVKRDADV 639
A + A V
Sbjct: 250 AEATREARAKV 260
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 31.5 bits (68), Expect = 0.56
Identities = 45/209 (21%), Positives = 85/209 (40%)
Frame = +1
Query: 22 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 201
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 202 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 381
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 382 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 561
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 562 DVYDDVQYLASLGKSQTANVKRDADVGVA 648
DV VQ ++ A + A V VA
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVA 311
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 31.5 bits (68), Expect = 0.56
Identities = 45/209 (21%), Positives = 85/209 (40%)
Frame = +1
Query: 22 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 201
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 202 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 381
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 382 VKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 561
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 562 DVYDDVQYLASLGKSQTANVKRDADVGVA 648
DV VQ ++ A + A V VA
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVA 311
>U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical
protein F47B7.2b protein.
Length = 678
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -3
Query: 663 ISVSQSDTDVSVPLHVGRLRLPQAGQILDIVVDVL-NREGQNLDSHSS--DVRRSHFAYQ 493
+S Q + +H G++ +A + V+D R +++D + D RSH+ +
Sbjct: 571 LSAGQRHLNPKFQVHAGKVDQLEANDKVKNVLDASPQRTWKDIDGYDGLPDSGRSHYYFI 630
Query: 492 ARELVPVFVHLFYCKSSENSSQ 427
L+ V + + YCK +N S+
Sbjct: 631 FLSLIGVALIVIYCKYRKNRSK 652
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 292 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 447
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 292 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 447
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 28.7 bits (61), Expect = 3.9
Identities = 32/142 (22%), Positives = 59/142 (41%)
Frame = +1
Query: 229 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 408
I L V + N + + + V ++V V K+ + +T+ +G K+
Sbjct: 103 IDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDP---ITSVVG--VGNATDSTKLLAQ 157
Query: 409 QTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 588
TL R ILGT T+ E+ DR++ + ++ GI++ ++DV Q
Sbjct: 158 TTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQ 213
Query: 589 ASLGKSQTANVKRDADVGVALA 654
++ + A RDA + A
Sbjct: 214 RAM--AAEAEATRDAGAKIIAA 233
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 28.7 bits (61), Expect = 3.9
Identities = 32/142 (22%), Positives = 59/142 (41%)
Frame = +1
Query: 229 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 408
I L V + N + + + V ++V V K+ + +T+ +G K+
Sbjct: 103 IDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDP---ITSVVG--VGNATDSTKLLAQ 157
Query: 409 QTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 588
TL R ILGT T+ E+ DR++ + ++ GI++ ++DV Q
Sbjct: 158 TTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQ 213
Query: 589 ASLGKSQTANVKRDADVGVALA 654
++ + A RDA + A
Sbjct: 214 RAM--AAEAEATRDAGAKIIAA 233
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 292 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 447
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 292 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 447
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +1
Query: 88 GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 267
GF++G++H+ P + + + F T + I+ + L D+ + L V P C
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418
Query: 268 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTV 405
Y+ + G A + D L A EQ +GK + E+K+ +
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVKI 467
>Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical
protein K06B4.10 protein.
Length = 405
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 117 DSVDVAHFESFYSDFHDTHTALHN 46
D +D+AH ESF+++ H T T N
Sbjct: 230 DYIDLAHSESFFTNDHQTFTERDN 253
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 359 QAVVRSSSSFMILHWATPVTVSGTPWAVS-TYSHIGFNVITSRDIRWTSVTRH 204
Q + + S + H T +T++GT W VS S I F ++ ++RW + H
Sbjct: 178 QIIAITCSCLALFHKFTIITINGT-WIVSCACSSIVFFLVERINLRWKAEMEH 229
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 28.3 bits (60), Expect = 5.2
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +1
Query: 88 GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 267
GF++G++H+ P + + + F T + I+ + L D+ + L V P C
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418
Query: 268 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMT 402
Y+ + G A + D L A EQ +GK + E+K++
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVS 466
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 366 VPGQDRQRD*DDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCA 515
V G +Q CP+ +F+ S+N Y G G G +GCA
Sbjct: 1419 VNGTPKQCTASPCPSGYKCTFSKKSKNYYCCSSKASPGSSSGSGAANGCA 1468
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 322 KIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDR 477
+I +ED+L +T E+FLGK VKE T L+ ++ T+ + + +R
Sbjct: 391 EIGDEDDL-STPVEKFLGKLVKEKYSTDFYVLDKFPLSVRPFYTMPDAHDER 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,409
Number of Sequences: 27780
Number of extensions: 398623
Number of successful extensions: 1197
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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