Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0552
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64870.1 68418.m08160 expressed protein 39 0.003
At5g25260.1 68418.m02994 expressed protein 37 0.014
At5g25250.1 68418.m02993 expressed protein 36 0.032
At4g27585.1 68417.m03962 band 7 family protein similar to stomat... 31 0.69
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 30 1.2
At5g54100.1 68418.m06736 band 7 family protein similar to stomat... 30 1.6
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 29 2.8
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 28 4.9
At2g17120.1 68415.m01976 peptidoglycan-binding LysM domain-conta... 28 4.9
At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5)... 28 4.9
At1g30360.1 68414.m03712 early-responsive to dehydration stress ... 28 4.9
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 28 6.4
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 6.4
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 27 8.5
At5g58880.1 68418.m07377 hypothetical protein 27 8.5
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 27 8.5
At3g01760.1 68416.m00114 lysine and histidine specific transport... 27 8.5
>At5g64870.1 68418.m08160 expressed protein
Length = 479
Score = 39.1 bits (87), Expect = 0.003
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Frame = +1
Query: 124 NEALIVSGGCFGPTTKRTIVGGWAWAW--CLVTDVQRISLEVMTLNPMCEYVETAQGVPL 297
++ L ++GG G T + W + W C V DV ++ + M +++ +P
Sbjct: 9 SQYLAITGG--GITDIKLAKKSWVFPWQSCTVFDVSPVNY-TFEVQAM-----SSEKLPF 60
Query: 298 TVTGVAQCKIMNEDE---LLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVY 468
+ V +D LL K + V +EG R ++ ++T+EEV+
Sbjct: 61 VIPAVFTIGPRVDDPHALLLYAMLMSQHDKHSNHVNELVQGVIEGETRVLVASMTMEEVF 120
Query: 469 KDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYD--DVQYLASLGKSQTANVKRDADVG 642
K +F V + ++ + G+ I + +K + D +Y + LG+ A +
Sbjct: 121 KGTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKID 180
Query: 643 VALA 654
VA A
Sbjct: 181 VAEA 184
>At5g25260.1 68418.m02994 expressed protein
Length = 463
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +1
Query: 376 KTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 555
K + V +EG R + ++T+EE++K +F V + ++ + G+ I +
Sbjct: 89 KQSNHVNELVEGVIEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELDQFGLVIYNAN 148
Query: 556 IKDVYD--DVQYLASLGKSQTANVKRDADVGVALA 654
+K + D +Y + LG+ A + VA A
Sbjct: 149 VKQLVDVPGHEYFSYLGQKTQMEAANQARIDVAEA 183
>At5g25250.1 68418.m02993 expressed protein
Length = 470
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 415 LEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYD--DVQYL 588
+EG R + ++T+EE++K +F V + ++ + G+ I + +K + D +Y
Sbjct: 102 IEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVDVPGHEYF 161
Query: 589 ASLGKSQTANVKRDADVGVALA 654
+ LG+ A + V+ A
Sbjct: 162 SYLGQKTQMEAANQARIDVSEA 183
>At4g27585.1 68417.m03962 band 7 family protein similar to
stomatin-like protein [Zea mays] GI:7716464; contains
Pfam profile PF01145: SPFH domain / Band 7 family
Length = 411
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/79 (21%), Positives = 38/79 (48%)
Frame = +1
Query: 403 VLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQ 582
V+Q + +R+ LG +T+++ +++RD + E G++ L + I+D+
Sbjct: 151 VVQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDIMPPHG 210
Query: 583 YLASLGKSQTANVKRDADV 639
A++ A K+ A +
Sbjct: 211 VRAAMEMQAEAERKKRAQI 229
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 218 SVTRHQAHAHPPTMVRFVVGPKQPPETIS 132
S+T Q+H++PPT V P PPE ++
Sbjct: 152 SLTASQSHSNPPTPAAPTVPPPPPPEEVN 180
>At5g54100.1 68418.m06736 band 7 family protein similar to
stomatin-like protein [Zea mays] GI:7716464; contains
Pfam profile PF01145: SPFH domain / Band 7 family
Length = 401
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 403 VLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 567
V+Q + +R+ LG +T+++ +++RD + E G++ L + I+D+
Sbjct: 194 VMQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDI 248
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 366 VPGQDRQRD*DDC-PANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCAGRRKNG 533
+P RQR ++ P +GG F+SY S R G R G GRR G
Sbjct: 89 LPTGPRQRSEEEMQPGRLGGGFSSYGGRSGGRIGRDRDDSDGSWSGGGGGGGRRPYG 145
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 16 GKLNKFVIVLVVKCSVCIVKVTVKGFKMGNIHT 114
G+ +F++ +V+ +C+V T+K GN+ T
Sbjct: 164 GESERFLLTDIVRVLLCLVSATLKVVSFGNVFT 196
>At2g17120.1 68415.m01976 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain; supporting cDNA
gi|16226688|gb|AF428464.1|AF428464
Length = 350
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -1
Query: 485 NWSLSLYTSSTVRVPRIARK*PSNVCRTVILISLTVLPRNCSQAVVRSSSSFMILHWATP 306
NW+LS +SS ++ P + C +L + PR+C A + + F A P
Sbjct: 258 NWTLSCQSSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQTIFTTASPACP 317
Query: 305 VTVSGTPWAVSTYSHIGFNVI 243
+ +A + S F ++
Sbjct: 318 DSAGPDNYASTLSSSFNFVIV 338
>At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 368
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = -3
Query: 660 SVSQSDTDVSVPLHVGRLRLPQAGQILDIVVDVLNREGQNLDSHSSDVRRSHFAYQAREL 481
S +T+ + + VG LP L+ ++D+L +E N D +R + F +
Sbjct: 166 STINKETEAEI-IEVGNRSLP-----LETLIDMLKQETGNDDIEVGKIRTTLFDMFGDDS 219
Query: 480 VP-VFVHLFYCKSSENSSQMTLQRLQDSHLNLFDGLAQELL 361
P V + S+ + T+Q + D L + LAQE L
Sbjct: 220 SPKVKKFMNVILSNLQETTTTIQTVSDEVLGSVENLAQEFL 260
>At1g30360.1 68414.m03712 early-responsive to dehydration stress
protein (ERD4) nearly identical to ERD4 protein
(early-responsive to dehydration stress) [Arabidopsis
thaliana] GI:15375406; contains Pfam profile PF02714:
Domain of unknown function DUF221
Length = 724
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 478 DQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKR 627
+QFA LVR++ AP G+ E + +++Y + Y SL ++ + V +
Sbjct: 190 EQFAILVRDMPAPPDGQTQKEFIDSYFREIYPETFY-RSLVATENSKVNK 238
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +1
Query: 46 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 225
V+ C C+V V + N + P E I +G P+ K +VGG VTDV
Sbjct: 1044 VIYCLRCLVNVDIPL----NQGCLAPVEIRIPAGSFLSPSEKAAVVGGNVLTSQRVTDVV 1099
Query: 226 RISLEVMTLNPMC 264
+ + + C
Sbjct: 1100 LTAFQACACSQGC 1112
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 554 VKDRISIPILPTSGAATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRT 402
+K RI + + + S T P + SL L S+ PR++++ C T
Sbjct: 8 LKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCET 58
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/53 (20%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -1
Query: 158 PKQPPETISASLGPTVWMLPILNPFTVTFTIHTLHF--TTKTITNLFNLPKNQ 6
P QPP + +++ T+++L + F F+++ HF ++ + ++ ++P+ +
Sbjct: 39 PPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Frame = -3
Query: 624 LHVGRLRLPQAGQIL-DIVVDVLNREGQNLDSHSSDVRRSHFAYQARELVPVFVHLF--- 457
+H R R A QI+ D + + RE + + + + Y+ +E V V +F
Sbjct: 48 IHCSRERSRAAWQIIQDYLTPFVERERYEIPKNCR-LHPDNDLYRDQEHHKVHVDVFEWK 106
Query: 456 --YCKSSENSSQMTLQRLQDSHLNLFDGLAQELLAGSC 349
YCK S N + + H NL + + LA C
Sbjct: 107 CGYCKKSFNDEKFLDKHFSTRHYNLLNTTDTKCLADLC 144
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 447 SSENSSQMTLQRLQDSHLNLFDGLAQELLAGSCEKFVFVHDLALGDS 307
++ENSS + L ++QDSH + D + ++ EK + D G+S
Sbjct: 832 NAENSSDVILLQVQDSHKSPLDESVDQEISKEVEKTELLKDFC-GES 877
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 580 QYLASLGKSQTANVKRDADVGVALAN 657
QY+ S GK Q +NV++ A VAL N
Sbjct: 116 QYIDSSGKDQGSNVRKKAQSLVALVN 141
>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter [Arabidopsis thaliana] GI:2576361; contains
Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 479
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 13 FGK-LNKFVIV---LVVKCSVCIVKVTVKGFKMGNIH 111
FGK L ++IV L+V+ SVCIV + G + N+H
Sbjct: 132 FGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVH 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,950
Number of Sequences: 28952
Number of extensions: 374824
Number of successful extensions: 1154
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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