Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0551
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 156 1e-38
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 156 1e-38
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 156 1e-38
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 148 2e-36
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 148 2e-36
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.21
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 0.37
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 31 0.48
At1g51920.1 68414.m05853 expressed protein 31 0.64
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.85
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.85
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 1.1
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 2.0
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 6.0
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 6.0
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 27 7.9
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 27 7.9
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 27 7.9
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 1e-38
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = +1
Query: 103 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 282
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 283 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 456
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 1e-38
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = +1
Query: 103 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 282
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 283 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 456
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 1e-38
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = +1
Query: 103 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 282
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 283 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 456
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 148 bits (359), Expect = 2e-36
Identities = 70/135 (51%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 55 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 231
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 232 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 411
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 412 FGEETPALDVLKDYL 456
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 148 bits (359), Expect = 2e-36
Identities = 70/135 (51%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 55 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 231
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 232 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 411
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 412 FGEETPALDVLKDYL 456
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.21
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 163 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 342
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 343 LCK 351
K
Sbjct: 110 ATK 112
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.5 bits (68), Expect = 0.37
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 133 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 312
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 313 NNKKLGEWAGLCKIDKDGKARKIVG 387
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 31.1 bits (67), Expect = 0.48
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 136 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDN 315
LKT ++HG + G + ++ R L L++N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 316 NKKLGEWAGLCKI 354
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 373 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQP 227
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 169 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 330
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 169 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 330
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 265 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 390
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 196 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 285
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = -1
Query: 367 CHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL* 188
C C+ C+ QP C CQ E+ C V C R +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 187 RLREDRAQDHHG 152
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 220 IVLLASCQEL*RLREDRAQDHHGLKLSLAP 131
+ LLASC + +LRE+RA +G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 420 GNSSVGCAQGLPQVVELILRCNANPY 497
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 351 LAETSPFSKLFVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSG 184
LA+T SK+FV V L W + F A L+ + I L +PL+++ G
Sbjct: 73 LADT--LSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYG 126
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 227 WLRTVMKPHTRNLFRLCATNIRFHWSRL 310
WL + K H +F L T + + W+ L
Sbjct: 327 WLHELSKDHLSRIFHLLGTQLHYLWNTL 354
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 2 PGCRNSA-RGRQSNSQQPWLMLKSRSPP 82
PG +N+ + Q+ S QPW KS SPP
Sbjct: 594 PGLQNAILQSPQNTSSQPWSSGKSVSPP 621
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,545
Number of Sequences: 28952
Number of extensions: 248284
Number of successful extensions: 713
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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