Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0550
(479 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 181 3e-46
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.1
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.1
SB_30675| Best HMM Match : Ribosomal_L5_C (HMM E-Value=7.6) 29 2.6
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 3.5
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7) 27 6.1
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 6.1
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 27 8.0
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 27 8.0
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 27 8.0
SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 27 8.0
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 27 8.0
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 27 8.0
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 8.0
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 8.0
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 27 8.0
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 181 bits (440), Expect = 3e-46
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = +1
Query: 61 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 240
RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23 RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82
Query: 241 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 378
TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V +
Sbjct: 83 TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 109 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 201
L +GA ++CADN G L +A QG +N
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 109 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 201
L +GA ++CADN G L +A QG +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139
>SB_30675| Best HMM Match : Ribosomal_L5_C (HMM E-Value=7.6)
Length = 330
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 140 SAQLITAPTGRPREIRNFAPAEPPRPLLDILLYQIL 33
SA AP G PR+++ P PPRP + ++ ++L
Sbjct: 114 SAYFAGAPKGHPRDLQTRTP--PPRPCVRLICSRVL 147
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 393 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 262
A FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 206 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 63
SLF++ T T AP L + APT P ++ AP PP P
Sbjct: 67 SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114
>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 384 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 262
FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 192 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 94
T + + +I CP VVG V+ CS W T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362
>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
Length = 354
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 14 GLQESARGFDTTKCLREDVVVPRERNSVSPWVSQWEQ*STAPTTQGQRIC 163
G+Q+++R T C R+ VV P + + + S PT++ +++C
Sbjct: 292 GVQKASRSIGCTSCQRQTVVTPNKATNPAT-QSMCCPLDAPPTSENRKLC 340
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 102 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 239
P S SS+ R +H+GK S RSP T G HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 416 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 276
AT V A + L T+ PAL++K+IN +R N + L+ +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 161 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 60
R + P L + AP+G P + + APA P PRPL
Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 393 ALHFALVIDYDTRIVLKVYK-YSITPSE 313
AL FAL + YDT+I++ K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 161 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 60
R + P L + AP+G P + + APA P PRPL
Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +3
Query: 12 PGCRNRHEDLIQQNV*ERTWWFRGSEIPYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQR 191
PG + D ++Q ER +W P G SG+ N RR + + + Y+R
Sbjct: 563 PGAITNYGDCMRQPF-ERVYWAGTETSPVWKGYISGAVNAGRRAAKEVLELLYKLTIYER 621
Query: 192 SPEQTAGGR 218
+P GR
Sbjct: 622 APVFYRSGR 630
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 161 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 60
R + P L + AP+G P + + APA P PRPL
Sbjct: 963 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 161 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 60
R + P L + AP+G P + + APA P PRPL
Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 27.1 bits (57), Expect = 8.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 239 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRN-FAPAEPPRP 63
A+I P +L RP AI F P+L A+ + T P + N F + P+P
Sbjct: 31 ASICCPTNLKCTLHNRP-----AIFMLFVLPILIAKSMDIETN-PGPVTNMFMDSSDPQP 84
Query: 62 LLDILLYQI 36
L D L+Y +
Sbjct: 85 LTDNLIYPL 93
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 239 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 120
AT S + A+ SL PW+ T+R P +SA+ TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855
>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 820
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 120 SSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDC 236
+S RR+ RG+ CD C YQ Q + RG DC
Sbjct: 440 TSKNYRRKQRGQGKQCDNC-GYQHMANQESCPA-RGKDC 476
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 161 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 60
R + P L + AP+G P + + APA P PRPL
Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,539
Number of Sequences: 59808
Number of extensions: 389769
Number of successful extensions: 1031
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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